Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_F14
         (876 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29488-12|AAA68769.3|  617|Caenorhabditis elegans Hypothetical p...    43   3e-04
M77697-6|AAA27901.2|  603|Caenorhabditis elegans Hypothetical pr...    31   0.82 
Z81512-3|CAE46668.1| 3175|Caenorhabditis elegans Hypothetical pr...    28   7.6  
Z81512-2|CAB04172.2| 3184|Caenorhabditis elegans Hypothetical pr...    28   7.6  

>U29488-12|AAA68769.3|  617|Caenorhabditis elegans Hypothetical
           protein C56C10.1 protein.
          Length = 617

 Score = 43.2 bits (97), Expect = 3e-04
 Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
 Frame = +3

Query: 663 CL*KLQND-FRENYIEGDTSCIYNAAQALRTIQQFYGIVPRVFGKGQAAKQVWDLLCRLX 839
           CL  L++D F   ++E     +++ A     +Q  YG++P V+G G  +K +W+L+  L 
Sbjct: 144 CLLPLESDLFSLQHVESAQPDLFSVANMFVALQNLYGVIPTVYGLGSESKNLWNLVHALC 203

Query: 840 KEEQVPGNKGAP 875
              ++      P
Sbjct: 204 SSNELRARPDQP 215



 Score = 34.3 bits (75), Expect = 0.12
 Identities = 26/111 (23%), Positives = 49/111 (44%), Gaps = 3/111 (2%)
 Frame = +2

Query: 350 LXAQYSFLKDHEVNNMF---LLKPGSLPNITVKHIIFISRPKLSLMDLVADYILSIRAKQ 520
           + A  S +K H V  +    L K   + NI +   +F  RP +     + +Y+      +
Sbjct: 50  MIATSSDMKRHGVKRIMHFDLQKSPQVWNIEIDQRVFFLRPNVENARKIVEYVEESSENR 109

Query: 521 TAPVEFHLFFVPRKSELCKVHLTNRGVVSNMTIEEFKCDIIPFESDVMSLE 673
           +  V     +  R+ E C +   + GV+ ++T       ++P ESD+ SL+
Sbjct: 110 SICV----IWCNRQLEECDLAFESSGVIGHITQLSLNMCLLPLESDLFSLQ 156


>M77697-6|AAA27901.2|  603|Caenorhabditis elegans Hypothetical
           protein B0303.9 protein.
          Length = 603

 Score = 31.5 bits (68), Expect = 0.82
 Identities = 12/39 (30%), Positives = 24/39 (61%)
 Frame = +2

Query: 440 HIIFISRPKLSLMDLVADYILSIRAKQTAPVEFHLFFVP 556
           H++F   P +  +DL+ DYI ++R    + + + +FF+P
Sbjct: 88  HVVFFLAPTMVSLDLLCDYIDNVR--NDSKILYQVFFIP 124


>Z81512-3|CAE46668.1| 3175|Caenorhabditis elegans Hypothetical protein
            F25C8.3b protein.
          Length = 3175

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 21/84 (25%), Positives = 42/84 (50%)
 Frame = -1

Query: 672  SKDMTSLSNGMMSHLNSSIVMLLTTPLLVRCTLHSSLLRGTKNK*NSTGAVCLALIDKM* 493
            +KD++     M + ++  +V     PL+   TL ++ +RG ++     G+V  ++ D+  
Sbjct: 2791 AKDLSQCLTVMQNAISPPLVKQQAPPLISTSTLTTTFIRGAQDVTGRQGSV--SVTDRGH 2848

Query: 492  SATKSINESLGLLINIICLTVILG 421
            SAT S +    ++   IC  + LG
Sbjct: 2849 SATVSTHR---IVRESICQAIYLG 2869


>Z81512-2|CAB04172.2| 3184|Caenorhabditis elegans Hypothetical protein
            F25C8.3a protein.
          Length = 3184

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 21/84 (25%), Positives = 42/84 (50%)
 Frame = -1

Query: 672  SKDMTSLSNGMMSHLNSSIVMLLTTPLLVRCTLHSSLLRGTKNK*NSTGAVCLALIDKM* 493
            +KD++     M + ++  +V     PL+   TL ++ +RG ++     G+V  ++ D+  
Sbjct: 2800 AKDLSQCLTVMQNAISPPLVKQQAPPLISTSTLTTTFIRGAQDVTGRQGSV--SVTDRGH 2857

Query: 492  SATKSINESLGLLINIICLTVILG 421
            SAT S +    ++   IC  + LG
Sbjct: 2858 SATVSTHR---IVRESICQAIYLG 2878


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,706,192
Number of Sequences: 27780
Number of extensions: 376624
Number of successful extensions: 775
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)