Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_F14
         (876 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   2.8  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    22   8.5  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   8.5  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   8.5  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   8.5  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    22   8.5  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 7/25 (28%), Positives = 15/25 (60%)
 Frame = -2

Query: 218 WLLILVSLIFVKQPF*QMYLIIVIC 144
           WLL+++ L+F   P    + +++ C
Sbjct: 135 WLLLMLYLLFATLPLRLSFCVVLAC 159


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 6/20 (30%), Positives = 14/20 (70%)
 Frame = -1

Query: 873 VHPYFXELAPLXSICTIDPK 814
           ++P+F +++PL S+   D +
Sbjct: 53  INPFFCDMSPLLSLVCADTR 72


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +2

Query: 503 SIRAKQTAPVEFHLFFVPRKSELCKVHLTNRG 598
           SIR   TA    +L + P   +LC + + + G
Sbjct: 129 SIRLTITASCPMNLQYFPMDRQLCHIEIESFG 160


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +2

Query: 503 SIRAKQTAPVEFHLFFVPRKSELCKVHLTNRG 598
           SIR   TA    +L + P   +LC + + + G
Sbjct: 129 SIRLTITASCPMNLQYFPMDRQLCHIEIESFG 160


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +2

Query: 503 SIRAKQTAPVEFHLFFVPRKSELCKVHLTNRG 598
           SIR   TA    +L + P   +LC + + + G
Sbjct: 68  SIRLTITASCPMNLQYFPMDRQLCHIEIESFG 99


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +2

Query: 713 HKLHIQCCTGTKNHPTVLWN 772
           H+L+ Q  TG+ ++P+  W+
Sbjct: 118 HRLYAQIKTGSYDYPSPEWD 137


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 227,820
Number of Sequences: 438
Number of extensions: 4344
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)