Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_F13
         (868 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC757.08 |||exosome subunit Rrp45 |Schizosaccharomyces pombe|c...   190   3e-49
SPBC17D1.03c |||exosome subunit Rrp43 |Schizosaccharomyces pombe...    91   1e-19
SPCC1494.08c |||conserved fungal protein|Schizosaccharomyces pom...    30   0.49 
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    28   1.5  
SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyce...    28   1.5  
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb...    27   4.6  
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    27   4.6  
SPBC14C8.02 |tim44||TIM23 translocase complex subunit Tim44|Schi...    26   6.0  

>SPCC757.08 |||exosome subunit Rrp45 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 291

 Score =  190 bits (462), Expect = 3e-49
 Identities = 86/224 (38%), Positives = 136/224 (60%), Gaps = 1/224 (0%)
 Frame = +2

Query: 125 DTCLSNCEKNFIQKIVSQGHRLDGRNFNETRKLDISFGSEYGCCIVSLGETKILSEVTCE 304
           +T L+N  K F+   + +G RLDGR  ++ R L+I FG EYG   VS G T++++ +T E
Sbjct: 6   ETSLNN--KEFVLNSLEKGLRLDGRQLSDFRSLEIQFGKEYGQVDVSFGHTRVMARITTE 63

Query: 305 VAQPKQIRPNEGIIFINVELNPMAAPQFEANRQTDLTVYLVRLLEKCYKDSKCIDLESLC 484
           + +P   RP +GI  I  EL P+A   FEA R +D  + + RL+EK  + S  +D ESLC
Sbjct: 64  ITKPYTDRPFDGIFSITTELTPLAYSAFEAGRVSDQEIVISRLIEKAVRRSNALDTESLC 123

Query: 485 IVVEEKVWSLRINIKVLNHDGNLTECASIATLASIAHFXRPDFTRDGDRVIIHTLTEKDP 664
           I+  +K W +R ++  +NHDGNL + A IA +A++ HF RP+ T  G+ V +H + E+ P
Sbjct: 124 IISGQKCWHVRASVHFINHDGNLVDAACIAVIAALCHFRRPELTVVGEEVTVHPVEERVP 183

Query: 665 IPTVLYHYPVCTTFALYSN-DILLSDPNFLEESVCTSNTEEGIN 793
           +P  + H P+C TF+ ++N ++ + D    EE +C  +    +N
Sbjct: 184 VPLSILHMPICVTFSFFNNGELAIVDATLEEEDLCNGSMTITLN 227


>SPBC17D1.03c |||exosome subunit Rrp43 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 270

 Score = 91.5 bits (217), Expect = 1e-19
 Identities = 63/213 (29%), Positives = 113/213 (53%), Gaps = 6/213 (2%)
 Frame = +2

Query: 149 KNFIQKIVSQGHRLDGRNFNETRKLDIS---FGSEYGCCIVSLGETKILSEVTCEVAQPK 319
           + ++  +++Q  R DGR+ +E R++ I+     +  G  I+  GE   +  +  E+A+P 
Sbjct: 23  EQYLSHLLNQDVRSDGRSVSEFREIVINDNCISTANGSAIIRAGENVFVCGIKAEIAEPF 82

Query: 320 QIRPNEGIIFINVELNPMAAPQFEANRQTDLTVYLVRLLEKCYKDSKCIDLESLCIVVEE 499
           +  PNEG I  N+EL+P+ + +F+    +DL   + + L +  + S  I+L+SLCI  ++
Sbjct: 83  ENSPNEGWIVPNLELSPLCSSKFKPGPPSDLAQVVSQELHQTLQQSNLINLQSLCIFEKK 142

Query: 500 KVWSLRINIKVLNHDGNLTECASIATLASIAHFXRPDFTRDGD--RVI-IHTLTEKDPIP 670
             W L  +I  LN+DG+  + A  A  A++     P    D D  RVI   TLT    + 
Sbjct: 143 AAWVLYADIICLNYDGSAFDYAWAALFAALKTVKLPTAVWDEDLERVICASTLTRPVQLS 202

Query: 671 TVLYHYPVCTTFALYSNDILLSDPNFLEESVCT 769
           T +  +    +++++ +D LL+DP   EE + T
Sbjct: 203 TEVRSF----SWSVF-DDKLLADPTDEEEDLST 230


>SPCC1494.08c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 274

 Score = 29.9 bits (64), Expect = 0.49
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
 Frame = +2

Query: 650 TEKDPI--PTVLYHYPVCTTFALY-SNDILLSDPNFLEESVCTSNTEEGINTAGGLLV 814
           TE +P+    V + Y  C +  +   ND LL D   + + +C S+T+ G+   G L +
Sbjct: 50  TEAEPVLEHRVTWEYETCVSVRMIIDNDNLLKDKFLILQVLCDSHTDSGVIRLGILKI 107


>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 29/106 (27%), Positives = 43/106 (40%)
 Frame = -2

Query: 777 VLLVHTDSSRKLGSESKISLLYNANVVHTG**YKTVGIGSFSVNV*IITRSPSLVKSGLX 598
           VL    +SS+ L S+S   + ++ N  H+    KT+        +     S  L  S + 
Sbjct: 420 VLEYLANSSKGLASKS---IEFSKNRGHSQKKRKTLSESQAGDTLMSSEESHQLYDSDVM 476

Query: 597 KCAIEASVAILAHSVKLPSWFRTLILILKDQTFSSTTMQSDSRSMH 460
            C      +IL HS+ LP   RT I +   Q   S    +   SMH
Sbjct: 477 DCCFSFLASILTHSIALPRLLRTKIDLCTLQISLSNPTSTVLISMH 522


>SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = -2

Query: 330 GLICFG*ATSHVTSDRIFVSPKDTI 256
           GLI F  AT+H ++ + F+ PKDT+
Sbjct: 203 GLIAFRKATAHQSAMKEFLKPKDTL 227


>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 840

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 15/72 (20%), Positives = 29/72 (40%)
 Frame = -2

Query: 672 VGIGSFSVNV*IITRSPSLVKSGLXKCAIEASVAILAHSVKLPSWFRTLILILKDQTFSS 493
           +G G+F+      T S +   +         SV +   +  +PSW + +  IL     +S
Sbjct: 172 IGKGNFTSTTVTTTTSATATPTASASSNAVESVFVTKTAASVPSWIKVITKILGAAVVTS 231

Query: 492 TTMQSDSRSMHF 457
             +  +   +HF
Sbjct: 232 IVLLLEKIFLHF 243


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
            Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +2

Query: 422  LVRLLEKCYKDSKCIDLESLCIVVEEKVWSLRINIKVLN 538
            LVR+L K   D + + +++LC +V +  +   I I ++N
Sbjct: 1014 LVRMLGKSNGDLRAVIMDTLCAIVSQLGYDYSIFIPMVN 1052


>SPBC14C8.02 |tim44||TIM23 translocase complex subunit
           Tim44|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 427

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = +2

Query: 308 AQPKQIRPNEGIIFINVELNPMAAPQFEANRQTDLTVYLVRLLEKCYKDSK 460
           A   +I+PNE +  + V  NP    + E  +     V  ++ L+K Y++S+
Sbjct: 189 ASSARIQPNEDVQSVVVHSNPSWKNKVEQIKNESRLVRKIQELKKSYQESE 239


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,598,444
Number of Sequences: 5004
Number of extensions: 76605
Number of successful extensions: 201
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)