Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_F13
(868 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0185 - 20748206-20748405,20749067-20749232,20749373-207494... 139 5e-35
11_03_0222 + 11880333-11880551,11880667-11880736,11880839-118809... 57 2e-08
12_02_0002 + 12119832-12120003,12120620-12120866,12121011-121210... 36 0.032
01_01_0513 + 3736893-3737047,3737298-3737340,3737631-3737765,373... 29 3.6
03_06_0642 + 35239658-35240083,35240167-35240238,35240305-352409... 29 6.4
>02_04_0185 -
20748206-20748405,20749067-20749232,20749373-20749471,
20749487-20749561,20749663-20749743,20750121-20750274,
20750330-20750425,20750518-20750727,20750746-20750957
Length = 430
Score = 139 bits (336), Expect(2) = 5e-35
Identities = 71/206 (34%), Positives = 120/206 (58%), Gaps = 17/206 (8%)
Frame = +2
Query: 236 GSEYGCCIVSLGETKILSEVTCEVAQPKQIRPNEGIIFINVELNPMAAPQFEANRQTDLT 415
G E G V LG+T+++ T ++ QP + RPNEG + I E +PMA P FE R +
Sbjct: 70 GVEDGSAEVQLGDTRVMGYATAQLVQPYKDRPNEGTLAIFTEFSPMADPAFEPGRPGESA 129
Query: 416 VYLVRLLEKCYKDSKCIDLESLCIVVEEKVWSLRINIKVLNHDG-------------NLT 556
+ L R++++ ++S+ +D+ESLC+V + VWS+R+++ +L++ G NL
Sbjct: 130 IELGRVVDRGLRESRAVDMESLCVVAGKHVWSVRVDLHILDNGGELNVPDAMVLSLRNLI 189
Query: 557 ECASIATLASIAHFXRPDFT---RDGDRVIIHTLTEKDPIPTVLYHYPVCTTFALY-SND 724
+ A+IA LA+++ F RP+ T DG +V +H +DP+P ++H P+ TFA + +
Sbjct: 190 DAANIAALAALSTFRRPECTVGGEDGQQVTVHDPEVRDPLPLTIHHLPIAVTFAYFGEGN 249
Query: 725 ILLSDPNFLEESVCTSNTEEGINTAG 802
I++ DP + EE+V IN+ G
Sbjct: 250 IMVIDPTYKEEAVMGGRMTATINSNG 275
Score = 27.1 bits (57), Expect(2) = 5e-35
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 146 EKNFIQKIVSQGHRLDGRNFNETRKLDISFG 238
E+ FI++ + R+DGR + R+L I FG
Sbjct: 13 EREFIERALQSDLRVDGRRPFDFRRLKILFG 43
>11_03_0222 +
11880333-11880551,11880667-11880736,11880839-11880944,
11881490-11881556,11881597-11881692
Length = 185
Score = 56.8 bits (131), Expect = 2e-08
Identities = 30/121 (24%), Positives = 58/121 (47%), Gaps = 3/121 (2%)
Frame = +2
Query: 155 FIQKIVSQGHRLDGRNFNETRKLDISFG---SEYGCCIVSLGETKILSEVTCEVAQPKQI 325
F+++ + + R D R E R ++ S +G +V LG+T +L+ + EV P
Sbjct: 30 FLERHLRESVRPDARRPAEARPTTVALAAVSSAHGSALVRLGDTAMLASIKLEVMSPSGE 89
Query: 326 RPNEGIIFINVELNPMAAPQFEANRQTDLTVYLVRLLEKCYKDSKCIDLESLCIVVEEKV 505
P+EG I + + P+ +P R ++ + + LE S ++L+ LC++ +
Sbjct: 90 APDEGSIAVEFHMPPICSPLVRPGRPAEVAPVISKNLEDILMSSGMLNLKELCLISGKAS 149
Query: 506 W 508
W
Sbjct: 150 W 150
>12_02_0002 +
12119832-12120003,12120620-12120866,12121011-12121050,
12121584-12121676,12124850-12124928,12124973-12125019,
12126178-12126266,12126353-12126424,12126617-12126710,
12127167-12127206,12127321-12127445,12130472-12130615,
12131510-12131740
Length = 490
Score = 36.3 bits (80), Expect = 0.032
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +2
Query: 302 EVAQPKQIRPNEGIIFINVELNPMAAPQFEANRQTDLTVYLVRLLEKCYKDSK 460
E+ +P + P++G + I V+ +P AAP FE + + L L++C K
Sbjct: 155 ELGKPSILHPDKGKVSIFVDCSPTAAPMFEGRGSEEFSAELCVALQRCLLGGK 207
Score = 33.5 bits (73), Expect = 0.22
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 7/105 (6%)
Frame = +2
Query: 134 LSNCEKNFIQKIVSQGHRLDGRNFNETRKLDISFG---SEYGC---CIVSLGETKILSEV 295
LS EK+FI+ ++Q R DGR + R + + G +G C+ S+G V
Sbjct: 4 LSEGEKHFIRGGIAQDLRTDGRRRLQFRAISVETGVIPQVFGFISPCVFSIGRA-----V 58
Query: 296 TCEVAQPKQIRPNEGI-IFINVELNPMAAPQFEANRQTDLTVYLV 427
C A P + G+ + +E++P AA + +A + + +V
Sbjct: 59 ACIEASPTAEYTDAGLQDIVQIEVDPAAAAEIDAKLTVAVQIEVV 103
Score = 31.1 bits (67), Expect = 1.2
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +2
Query: 431 LLEKCYKDSKCIDLESLCIVVEEKVWSLRINIKVLNHDGNLTECASIATLASIA 592
+ +K IDL SL +V + W L I+ V++ DGNL + + A +++
Sbjct: 317 IFKKTLMKRAAIDLSSLIVVDGKVCWDLYIDGLVVSSDGNLLDALAAAIKVALS 370
>01_01_0513 +
3736893-3737047,3737298-3737340,3737631-3737765,
3737879-3738010,3738129-3738278,3738353-3738373,
3738468-3738675,3738796-3738877,3738983-3739088,
3739245-3739358,3739458-3739685
Length = 457
Score = 29.5 bits (63), Expect = 3.6
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +3
Query: 651 LRKTQYQQFCIIILCVQHLHCTVMISYSPILISWKN 758
+R T +Q I ILC Q +HC I S I +SW+N
Sbjct: 396 IRGTSSEQEAIKILCSQSVHCQ-GIYLSNINLSWEN 430
>03_06_0642 +
35239658-35240083,35240167-35240238,35240305-35240919,
35241253-35241435,35241604-35241663,35241733-35241936,
35242497-35242745,35243609-35243707,35243760-35243858,
35244463-35244480,35244668-35244862,35244981-35245073,
35245265-35245531,35245884-35246102
Length = 932
Score = 28.7 bits (61), Expect = 6.4
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -2
Query: 585 EASVAILAHSVKLPSWFRTLILILKDQTFSSTTMQSDSRSM 463
E + I H LP ILIL D++ + +Q+DSRS+
Sbjct: 721 EGNAVIRRHLESLPLESFDSILILADESVEDSAIQADSRSL 761
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,450,721
Number of Sequences: 37544
Number of extensions: 425130
Number of successful extensions: 951
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 950
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -