Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_F13
         (868 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00033-15|AAC48298.2|  434|Caenorhabditis elegans Hypothetical p...   177   1e-44
Z92838-10|CAB07412.2|  312|Caenorhabditis elegans Hypothetical p...    46   4e-05
Z92832-9|CAB07377.2|  312|Caenorhabditis elegans Hypothetical pr...    46   4e-05
U00033-16|AAM29690.1|   65|Caenorhabditis elegans Hypothetical p...    40   0.002
U39999-1|AAK93855.1|  277|Caenorhabditis elegans Hypothetical pr...    33   0.26 
AF000264-2|AAC71121.1|  761|Caenorhabditis elegans Half transpor...    31   1.1  
U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical pr...    31   1.4  
AF003390-1|AAB54271.2|  473|Caenorhabditis elegans Hypothetical ...    31   1.4  
AC092690-2|AAK73855.2|  745|Caenorhabditis elegans Hypothetical ...    29   3.3  
Z81147-3|CAB03530.1|  305|Caenorhabditis elegans Hypothetical pr...    29   5.7  
Z81520-1|CAB04223.1|  399|Caenorhabditis elegans Hypothetical pr...    28   7.5  

>U00033-15|AAC48298.2|  434|Caenorhabditis elegans Hypothetical
           protein F37C12.13a protein.
          Length = 434

 Score =  177 bits (430), Expect = 1e-44
 Identities = 81/217 (37%), Positives = 139/217 (64%), Gaps = 1/217 (0%)
 Frame = +2

Query: 119 MRDTCLSNCEKNFIQKIVSQGHRLDGRNFNETRKLDISFGSEYGCCIVSLGETKILSEVT 298
           MR   ++NCEK  I + +  G R D R+  E R + +  G+E G  I ++G TK+++ V+
Sbjct: 1   MRVQPVTNCEKAVILEALKIGKRFDFRSLEEFRDVKLVVGAEVGTAICTIGNTKVMAAVS 60

Query: 299 CEVAQPKQIRPNEGIIFINVELNPMAAPQFEANRQTDLTVYLVRLLEKCYKDSKCIDLES 478
            E+A+P  +RP++G+I I+V+L+PMA    E +R     + L+RLLE   +DS+CID+E+
Sbjct: 61  AEIAEPSSMRPHKGVINIDVDLSPMANYANEHDRLGSKGMELIRLLELIIRDSRCIDVEA 120

Query: 479 LCIVVEEKVWSLRINIKVLNHDGNLTECASIATLASIAHFXRPDFTRDGDRVIIHTLTEK 658
           LCI   +++W +R+++++L+ DG+L +CA +A + ++ HF RP+ T +    +I++  EK
Sbjct: 121 LCIRAGKEIWKIRVDVRILDEDGSLLDCACLAAITALQHFRRPNVTLEPHHTLIYSEYEK 180

Query: 659 DPIPTVLYHYPVCTTFALY-SNDILLSDPNFLEESVC 766
            P+P  +YH P+CTT  L     I++ DP   +E+ C
Sbjct: 181 APVPLNIYHMPICTTIGLLDKGQIVVIDPTD-KETAC 216


>Z92838-10|CAB07412.2|  312|Caenorhabditis elegans Hypothetical
           protein F31D4.1 protein.
          Length = 312

 Score = 46.0 bits (104), Expect = 4e-05
 Identities = 42/169 (24%), Positives = 78/169 (46%), Gaps = 10/169 (5%)
 Frame = +2

Query: 134 LSNCEKNFIQKIVSQGHRLDGRNFNETRKLDISFG---SEYGCCIVSLGETK-ILSEVTC 301
           LS+ EK F+        R DGR+  + R++ +  G      G C V LG+T  +L+ +  
Sbjct: 5   LSDDEKLFLITGAEANIRNDGRSCQDFRQIILERGVLSGTNGSCRVQLGQTTDVLAGIKL 64

Query: 302 EVAQ---PKQIRPNEGIIFINVELNPMAAPQFEANRQTDLTVYLVRLLEKCYKDSKCIDL 472
           E+       +  P + I F NV+ +  A+ QF      +    L    +  Y  SK +D+
Sbjct: 65  ELESYDAETEKEPKQPINF-NVDFSANASSQFAGKGGDEYAEELSAAFQAAY--SKALDI 121

Query: 473 E---SLCIVVEEKVWSLRINIKVLNHDGNLTECASIATLASIAHFXRPD 610
               +   + +   W + ++I VL  DG++++  SIA + +++    P+
Sbjct: 122 MPNLAKTQLADGYRWKINVDISVLQWDGSVSDAISIAIIGALSDLEFPE 170


>Z92832-9|CAB07377.2|  312|Caenorhabditis elegans Hypothetical
           protein F31D4.1 protein.
          Length = 312

 Score = 46.0 bits (104), Expect = 4e-05
 Identities = 42/169 (24%), Positives = 78/169 (46%), Gaps = 10/169 (5%)
 Frame = +2

Query: 134 LSNCEKNFIQKIVSQGHRLDGRNFNETRKLDISFG---SEYGCCIVSLGETK-ILSEVTC 301
           LS+ EK F+        R DGR+  + R++ +  G      G C V LG+T  +L+ +  
Sbjct: 5   LSDDEKLFLITGAEANIRNDGRSCQDFRQIILERGVLSGTNGSCRVQLGQTTDVLAGIKL 64

Query: 302 EVAQ---PKQIRPNEGIIFINVELNPMAAPQFEANRQTDLTVYLVRLLEKCYKDSKCIDL 472
           E+       +  P + I F NV+ +  A+ QF      +    L    +  Y  SK +D+
Sbjct: 65  ELESYDAETEKEPKQPINF-NVDFSANASSQFAGKGGDEYAEELSAAFQAAY--SKALDI 121

Query: 473 E---SLCIVVEEKVWSLRINIKVLNHDGNLTECASIATLASIAHFXRPD 610
               +   + +   W + ++I VL  DG++++  SIA + +++    P+
Sbjct: 122 MPNLAKTQLADGYRWKINVDISVLQWDGSVSDAISIAIIGALSDLEFPE 170


>U00033-16|AAM29690.1|   65|Caenorhabditis elegans Hypothetical
           protein F37C12.13b protein.
          Length = 65

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 20/54 (37%), Positives = 30/54 (55%)
 Frame = +2

Query: 119 MRDTCLSNCEKNFIQKIVSQGHRLDGRNFNETRKLDISFGSEYGCCIVSLGETK 280
           MR   ++NCEK  I + +  G R D R+  E R + +  G+E G  I ++G TK
Sbjct: 1   MRVQPVTNCEKAVILEALKIGKRFDFRSLEEFRDVKLVVGAEVGTAICTIGNTK 54


>U39999-1|AAK93855.1|  277|Caenorhabditis elegans Hypothetical
           protein F41G3.14 protein.
          Length = 277

 Score = 33.1 bits (72), Expect = 0.26
 Identities = 48/223 (21%), Positives = 95/223 (42%), Gaps = 17/223 (7%)
 Frame = +2

Query: 149 KNFIQKIVSQGHRLDGRNFNETRKLDISFGSEYGCCIVSLGETKILSEVTCEVAQPKQIR 328
           + +    + +G   DGR   + +KL    G E G    S+  T+ ++ V+C +     + 
Sbjct: 12  RGYFATFIKEGVYPDGRGLLDEQKLVFKQG-ECGGVGSSVVSTQGVT-VSCSIQASVSLV 69

Query: 329 PNEGIIFINVELNPMAAPQFEANRQTDLTVYLVRLLEKCY---KDSKCIDLESLCIVVEE 499
            +  ++ I +E +   +   E + +   +V L      C+   ++ +C+D+    + +E 
Sbjct: 70  SDAPLVDIKIEGSQQLS---EKDAEDCNSVLLSLFTNNCFVRRENLRCLDVCGKPLPLE- 125

Query: 500 KVWSLRINIKVLNHDGNLTECASIATLASIAHFXRPDFT---RDGDRVIIH-TLTEKD-- 661
             W L I +KVL+ +GN  + A  A  A++     P       +GD   I  T  + D  
Sbjct: 126 --WQLHIIVKVLSLEGNFLDAAVCALGAALVDAKLPSIVLNHSEGDESTIEKTQIQADYR 183

Query: 662 PIPTVLYHYP-VCTTFALY-------SNDILLSDPNFLEESVC 766
            +  +    P +C +F ++        +++LL  P     SVC
Sbjct: 184 TMHRLTLEEPLMCCSFGIFVDVNSDKKSEVLLLSPTLEAISVC 226


>AF000264-2|AAC71121.1|  761|Caenorhabditis elegans Half transporter
           (pgp related)protein 2 protein.
          Length = 761

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
 Frame = -2

Query: 633 TRSPSLVKSGLXKCAIEASVAILAHSVKLPSWFRTLILILKD---QTFSSTTMQSDSRSM 463
           T S +LV+  L +CA E +V I+AH +        + +I+K    Q  + T + +D+  M
Sbjct: 685 TESEALVQQALSRCAQERTVIIVAHRLSTIEKANKIAVIVKGCLVQMGTHTELMTDTDGM 744

Query: 462 HF 457
           ++
Sbjct: 745 YY 746


>U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical
           protein ZK783.1 protein.
          Length = 2585

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
 Frame = +2

Query: 437 EKCYKDSKCIDLESLCIVVEEKVWSLRINIKVLNHDGNLTECA--SIATLASIAHFXRPD 610
           +KC   ++C++ +S+C  V ++  +L    K   H     EC   + ++ +S       D
Sbjct: 413 KKCVDINECVENDSVCGGVGDRCVNLFGGFKCCQHGSTEAECTDQAFSSDSSTISSHGAD 472

Query: 611 FTRDGDRVI 637
           FT  G+++I
Sbjct: 473 FTTTGEQII 481


>AF003390-1|AAB54271.2|  473|Caenorhabditis elegans Hypothetical
           protein R155.1a protein.
          Length = 473

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 18/63 (28%), Positives = 36/63 (57%)
 Frame = +2

Query: 167 IVSQGHRLDGRNFNETRKLDISFGSEYGCCIVSLGETKILSEVTCEVAQPKQIRPNEGII 346
           IV  GH L G  F+ET   DI++ + +  CI++L    ++ +V     +P+ ++P++ + 
Sbjct: 95  IVFLGHLLIGYWFHETDTYDITWTTPF--CIMTLRFIGLVMDVYDGAQKPEHLKPDQKLT 152

Query: 347 FIN 355
            I+
Sbjct: 153 AIS 155


>AC092690-2|AAK73855.2|  745|Caenorhabditis elegans Hypothetical
           protein BE0003N10.1 protein.
          Length = 745

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = +2

Query: 179 GHRLDGRNFNETRKLDIS---FGSEYGCCIVSLGETKILSEVT 298
           G R DGR  +E R + I    +   +GC I   G+T+++S VT
Sbjct: 332 GIRCDGRRPDEFRPITIHVDMYKKLHGCSIFQRGQTQVMSTVT 374


>Z81147-3|CAB03530.1|  305|Caenorhabditis elegans Hypothetical
           protein T09E11.3 protein.
          Length = 305

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +2

Query: 434 LEKCYKDSKCIDLESLCIVVEEKVWS 511
           L+KC ++++C D  S  I + EKV+S
Sbjct: 132 LDKCVRENRCYDCGSNMICIVEKVYS 157


>Z81520-1|CAB04223.1|  399|Caenorhabditis elegans Hypothetical
           protein F31B9.1 protein.
          Length = 399

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 570 ILAHSVKLPSWFRTLILILKDQTFSS 493
           IL HSV+LP W R L+ +L   + S+
Sbjct: 300 ILDHSVQLPQWLRLLLNVLSVMSSST 325


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,802,555
Number of Sequences: 27780
Number of extensions: 427383
Number of successful extensions: 1148
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1099
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1148
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2171433726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)