Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_F12
         (969 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    30   0.56 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.98 
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    27   4.0  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   5.3  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   5.3  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   6.9  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.9 bits (64), Expect = 0.56
 Identities = 16/41 (39%), Positives = 16/41 (39%)
 Frame = +1

Query: 763 PXGGXXPPPXXFKXPXGSPPXHPPXXPPLXXPPGXKXXTPA 885
           P G   PPP     P   PP  PP  PP       K  TPA
Sbjct: 5   PPGNPPPPPPP---PGFEPPSQPPPPPPPGYVKKRKNKTPA 42


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.1 bits (62), Expect = 0.98
 Identities = 14/41 (34%), Positives = 16/41 (39%)
 Frame = +1

Query: 763 PXGGXXPPPXXFKXPXGSPPXHPPXXPPLXXPPGXKXXTPA 885
           P  G  PPP       G+ P  PP  PP     G +   PA
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPA 796



 Score = 26.6 bits (56), Expect = 5.3
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +1

Query: 256 LMGGAAXPPXVXXXSGPGXPPP 321
           +MGG   PP     +G G PPP
Sbjct: 757 IMGGPPPPPPPPGVAGAGPPPP 778


>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 13/27 (48%), Positives = 13/27 (48%)
 Frame = -2

Query: 860 GGXXRGGXXGG*XGGDPXGFLKXXGGG 780
           GG  RGG  GG  GG   GF     GG
Sbjct: 163 GGGSRGGFGGGSRGGSRGGFRGGSRGG 189


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 12/33 (36%), Positives = 12/33 (36%)
 Frame = +1

Query: 760  PPXGGXXPPPXXFKXPXGSPPXHPPXXPPLXXP 858
            PP     PPP     P G P   PP  P    P
Sbjct: 1709 PPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAP 1741


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 15/40 (37%), Positives = 15/40 (37%), Gaps = 6/40 (15%)
 Frame = +1

Query: 760 PPXGGXXPPPXXFKXPXGSPPXHP------PXXPPLXXPP 861
           PP     PPP     P  SPP  P      P  PP   PP
Sbjct: 165 PPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPP 204


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 10/27 (37%), Positives = 11/27 (40%)
 Frame = +2

Query: 887 PFSPRGEGGXXPXPPRGXSPPGXGXPP 967
           P  P+G     P PPR     G   PP
Sbjct: 352 PLPPQGRSAPPPPPPRSAPSTGRQPPP 378



 Score = 25.8 bits (54), Expect = 9.2
 Identities = 11/32 (34%), Positives = 12/32 (37%)
 Frame = +1

Query: 763 PXGGXXPPPXXFKXPXGSPPXHPPXXPPLXXP 858
           P  G  PPP        +PP  PP  P    P
Sbjct: 370 PSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAP 401


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,386,875
Number of Sequences: 5004
Number of extensions: 14856
Number of successful extensions: 52
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 497299314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)