Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_F11
(898 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3A11.13 ||SPAC3H5.02|prefoldin subunit 6|Schizosaccharomyces... 56 9e-09
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 33 0.073
SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 32 0.13
SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr ... 31 0.22
SPAC24H6.02c |||TIM23 translocase complex subunit Tim15|Schizosa... 29 1.2
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 27 4.8
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog... 27 4.8
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar... 26 6.3
SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|... 26 6.3
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 26 8.4
>SPAC3A11.13 ||SPAC3H5.02|prefoldin subunit 6|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 114
Score = 55.6 bits (128), Expect = 9e-09
Identities = 32/94 (34%), Positives = 50/94 (53%)
Frame = +2
Query: 119 VQKDIKKAVTQKQQLDSQXXXXXXXXXXXXXXXXDSEVYKLIGPVLVKQDLEEARQNVSK 298
+Q ++ V ++L++Q DS +YK IGP LVKQ EEA+ NV
Sbjct: 11 LQTELSTYVESLKKLETQLQENTTVLNELEKVAPDSNIYKQIGPTLVKQSHEEAKTNVKT 70
Query: 299 RMEYISKEIKRTDDHICALENKQEALQENLNKLR 400
R+++I+KEI R LEN+ + QE +K++
Sbjct: 71 RLDFINKEIAR-------LENQTKISQEEFSKVK 97
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 32.7 bits (71), Expect = 0.073
Identities = 19/65 (29%), Positives = 37/65 (56%)
Frame = +2
Query: 263 QDLEEARQNVSKRMEYISKEIKRTDDHICALENKQEALQENLNKLRNDLGKLKLKA*KMC 442
+DLE+ N +++++ + K + LE+ ++ +E L KL DLGK++ + +
Sbjct: 299 EDLEKLHSNFAEKVKEEQELYKSLEKKRSDLESLLKSRRELLEKLTGDLGKIQGEIESLE 358
Query: 443 ELKVK 457
+LKVK
Sbjct: 359 KLKVK 363
>SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 345
Score = 31.9 bits (69), Expect = 0.13
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +2
Query: 266 DLEEARQNVSKRMEYISKEIKRTDDHICALENKQEALQENLNKLRND 406
DL E +Q + +E + E +R + E ++EAL+E +LRN+
Sbjct: 150 DLLEEQQQLKLEIERLEAETERANSETEQYEKQKEALEEEYEELRNE 196
>SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 266
Score = 31.1 bits (67), Expect = 0.22
Identities = 16/58 (27%), Positives = 34/58 (58%)
Frame = +2
Query: 311 ISKEIKRTDDHICALENKQEALQENLNKLRNDLGKLKLKA*KMCELKVKHVYSSIMTH 484
I K ++++D+ +C L+ + E LQ+ L + N+L + + + ++ E K K S+ +H
Sbjct: 128 IKKRLEKSDETVCKLKEENENLQDMLRNVGNELVESRDEIKELIE-KQKVQKESVKSH 184
>SPAC24H6.02c |||TIM23 translocase complex subunit
Tim15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 175
Score = 28.7 bits (61), Expect = 1.2
Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
Frame = +3
Query: 579 VWHYTKLTSSFC*LNIKIKNLTES---KFLFYC--HCRQICVWPSRCHHHS*TSDMPGAQ 743
+W + + T FC N+++KN + L +C + R I W + S D+
Sbjct: 1 MWSFARYTQKFCLRNLQLKNFSNKVKVSSLLFCSPNVRNISNWQCKRFTQSDAKDLASGV 60
Query: 744 PN 749
P+
Sbjct: 61 PS 62
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1811
Score = 26.6 bits (56), Expect = 4.8
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = +3
Query: 495 RELLLQIKILHINNLMYV*LYNNHEKTAVWHYTKLTSSFC*LNIKIKNLTE 647
+ LL IL I N + L N E+T VW T + + IKNL E
Sbjct: 1451 KALLSIFSILSITNSQRLYLAKNTEETEVWMLTTMVEALKAFIELIKNLFE 1501
>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 982
Score = 26.6 bits (56), Expect = 4.8
Identities = 8/23 (34%), Positives = 17/23 (73%)
Frame = +2
Query: 236 KLIGPVLVKQDLEEARQNVSKRM 304
+ +GP L+ D+E+ R+N S+++
Sbjct: 281 RYLGPALLNPDMEDDRENTSRKL 303
>SPAC6C3.06c |||P-type ATPase, calcium
transporting|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1033
Score = 26.2 bits (55), Expect = 6.3
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +1
Query: 556 TIIMKKLLCGITLNLPLPFVNSI*K*KILLKVSFYFTA 669
TI+M +LL + L +PF+ + + K LL + FY+ +
Sbjct: 965 TIVMSELLTLMMYILSVPFLTNYFELKFLLGLKFYWVS 1002
>SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|chr
3|||Manual
Length = 542
Score = 26.2 bits (55), Expect = 6.3
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +2
Query: 272 EEARQNVSKRMEYISKEIKRTDDHICALENKQEALQENLNKLRN 403
E RQN + + + E++R + +E +++ +ENLNK RN
Sbjct: 10 EHRRQNYKGKGTFQADELRRRRE-TQQIEIRKQKREENLNKRRN 52
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 952
Score = 25.8 bits (54), Expect = 8.4
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 320 EIKRTDDHICALENKQEALQENLNKLRNDLGKLK 421
E ++ D I AL + ++LQE L ++ND L+
Sbjct: 330 ETEKLQDQIKALLERNQSLQEALETVKNDEKNLR 363
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,904,815
Number of Sequences: 5004
Number of extensions: 52843
Number of successful extensions: 156
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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