Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_F11
(898 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0247 + 8261735-8261873,8261932-8261975,8262100-8262224,826... 70 3e-12
12_02_0953 - 24736642-24736673,24737104-24737188,24737267-247373... 32 0.54
06_03_0846 - 25328224-25330613,25330716-25330794 31 0.94
03_05_0035 + 20075691-20075695,20075720-20076326 30 2.9
03_01_0423 + 3240224-3240394,3241464-3241628,3242322-3242339,324... 30 2.9
04_04_1537 - 34235360-34235486,34236107-34236234,34236344-342364... 29 3.8
12_02_0365 + 18045340-18045783 29 5.0
04_04_1509 - 34074206-34074398,34074506-34074777,34075411-340756... 29 5.0
10_08_0043 - 14390398-14391531,14391850-14393691,14393800-143968... 28 8.8
04_04_0987 + 29938486-29938505,29938667-29938859,29938961-29941036 28 8.8
>02_02_0247 +
8261735-8261873,8261932-8261975,8262100-8262224,
8262331-8262391,8262434-8262442
Length = 125
Score = 69.7 bits (163), Expect = 3e-12
Identities = 33/57 (57%), Positives = 44/57 (77%)
Frame = +2
Query: 221 DSEVYKLIGPVLVKQDLEEARQNVSKRMEYISKEIKRTDDHICALENKQEALQENLN 391
++ VYKLIGPVLVKQDL EA+ NV KR+EYIS E+KR D + LE KQ + +E+++
Sbjct: 69 EANVYKLIGPVLVKQDLAEAKANVKKRIEYISAELKRMDRALKDLEEKQNSKKESVS 125
>12_02_0953 - 24736642-24736673,24737104-24737188,24737267-24737386,
24737484-24737549,24737629-24737799,24737901-24737999,
24738075-24738186,24738282-24738343,24738412-24738483,
24738583-24738681,24738764-24738997,24739104-24739178,
24739299-24739386,24739478-24739638,24739734-24739841,
24739934-24741922,24742007-24742279,24742957-24743295,
24743449-24745038,24745166-24745241,24745333-24745412,
24745614-24745679,24745761-24745830,24745899-24746134,
24746149-24746319,24746915-24747097,24747176-24747241,
24747326-24747389,24747472-24747530,24747612-24747699,
24747799-24747891,24747956-24748116,24748215-24748307,
24748405-24748518,24748654-24748773,24748852-24748935,
24749016-24749171,24749518-24750154,24752874-24752929
Length = 2815
Score = 32.3 bits (70), Expect = 0.54
Identities = 19/107 (17%), Positives = 47/107 (43%)
Frame = +2
Query: 119 VQKDIKKAVTQKQQLDSQXXXXXXXXXXXXXXXXDSEVYKLIGPVLVKQDLEEARQNVSK 298
+Q D K + +K+ ++Q +SE + ++ A + +
Sbjct: 2244 LQNDFSKLLDEKKYCETQVLILNEKLEMAQALAEESEAIATEAKQMAEERKTHAEEK-DE 2302
Query: 299 RMEYISKEIKRTDDHICALENKQEALQENLNKLRNDLGKLKLKA*KM 439
++ + + I+ + +CALENK + ++E + R +++L+ K+
Sbjct: 2303 EVKLLERSIEELETTVCALENKVDIIKEEAERQRMHREEIELELQKV 2349
>06_03_0846 - 25328224-25330613,25330716-25330794
Length = 822
Score = 31.5 bits (68), Expect = 0.94
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +2
Query: 236 KLIGPVLVKQDLEEARQNVSKRM-EYISKEIKRTDDHICALENKQEAL 376
K I + QDL++A N K+ +YIS E T+ + +L+NK+ A+
Sbjct: 539 KYIAEPSLPQDLKDAFNNFQKQAKDYISSETAATEALLSSLKNKESAI 586
>03_05_0035 + 20075691-20075695,20075720-20076326
Length = 203
Score = 29.9 bits (64), Expect = 2.9
Identities = 18/57 (31%), Positives = 34/57 (59%), Gaps = 5/57 (8%)
Frame = +2
Query: 272 EEARQNVSKR-MEYISKEIKRTDDHICALENKQEAL----QENLNKLRNDLGKLKLK 427
EE ++++K + ++S+ + R DD LE +QEAL +E ++L+ +L K + K
Sbjct: 147 EELFKSITKESLPHLSELLGRIDDQYATLERRQEALLIREKERSHELKGELAKEREK 203
>03_01_0423 +
3240224-3240394,3241464-3241628,3242322-3242339,
3242494-3242836,3244138-3248540,3248928-3249107,
3249108-3250892,3251055-3252173
Length = 2727
Score = 29.9 bits (64), Expect = 2.9
Identities = 14/53 (26%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Frame = +2
Query: 260 KQDLEEARQNVSKRMEYISKEI---KRTDDHICALENKQEALQENLNKLRNDL 409
+Q+LE++R+ + + E+ K+ +D +C+LE + Q+ +N+L D+
Sbjct: 532 EQELEQSRKEIESFHLSLQDEMAKRKQAEDALCSLEKQYAQSQKEINRLTLDM 584
Score = 29.5 bits (63), Expect = 3.8
Identities = 21/100 (21%), Positives = 43/100 (43%)
Frame = +2
Query: 119 VQKDIKKAVTQKQQLDSQXXXXXXXXXXXXXXXXDSEVYKLIGPVLVKQDLEEARQNVSK 298
V+ +++K V + Q LD Q +V K I LE+ N K
Sbjct: 882 VRSEMEKMVQKTQMLD-QELEHKNKEISELQNSLQEQVQKCILAETSLLRLEDLHTNSQK 940
Query: 299 RMEYISKEIKRTDDHICALENKQEALQENLNKLRNDLGKL 418
+ ++ +++R + + +EN + LQ +L+N + ++
Sbjct: 941 EAKTLAHDLERLSEQLTEVENDRLDLQNISRELKNTISEI 980
>04_04_1537 -
34235360-34235486,34236107-34236234,34236344-34236483,
34236967-34237023,34237358-34237475,34237585-34237734,
34237857-34237941,34238040-34238104,34238351-34238500,
34238835-34238910,34239071-34239150
Length = 391
Score = 29.5 bits (63), Expect = 3.8
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +1
Query: 58 KHNGGRNTKKVSKTARIISRCSKRHKESGHSETTI--RQPVK*K*SSQRGTKTLKKGFRG 231
KHN + K SKT +++HK S + TT+ R+P K S+ KT KG +G
Sbjct: 299 KHNSSHSKKGKSKTKECSCGSARKHKPSCNLATTVASREPPKTTAPSREPPKT--KGGQG 356
>12_02_0365 + 18045340-18045783
Length = 147
Score = 29.1 bits (62), Expect = 5.0
Identities = 15/50 (30%), Positives = 30/50 (60%)
Frame = +2
Query: 233 YKLIGPVLVKQDLEEARQNVSKRMEYISKEIKRTDDHICALENKQEALQE 382
Y++IG VLV++ ++E V + E + + + R ++ ALE K++ + E
Sbjct: 63 YRMIGGVLVERTIKEVLPAVQRNKEGLEEVVARMNE---ALEKKKKEITE 109
>04_04_1509 -
34074206-34074398,34074506-34074777,34075411-34075608,
34076092-34076187,34076318-34076500,34076597-34076799,
34076887-34077013,34077098-34077292,34077400-34077540,
34077669-34077812,34077876-34078040,34078776-34078976,
34079049-34079195,34079275-34079427,34079731-34079833,
34079954-34080069,34080168-34080349,34080442-34080541,
34081200-34081527,34081605-34081834,34081979-34082110,
34082787-34082859,34083274-34083338
Length = 1248
Score = 29.1 bits (62), Expect = 5.0
Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Frame = +2
Query: 269 LEEARQNVSKRMEYISKEIKRTDDHICALENKQEALQ---ENLNKLRNDLGKLKLKA*KM 439
+EE+ + E + K+ K+ D LE ++ LQ +++ ++ NDL KLK +
Sbjct: 601 VEESERKADLLNEELQKKTKQERDMQKELEGLRDTLQSERQSIKEVTNDLDKLK----SL 656
Query: 440 CELKVKHVYSSIM 478
C+ K + +S+M
Sbjct: 657 CDEKDSSLQASLM 669
>10_08_0043 -
14390398-14391531,14391850-14393691,14393800-14396825,
14397510-14397609
Length = 2033
Score = 28.3 bits (60), Expect = 8.8
Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Frame = +2
Query: 224 SEVYKLIGPV-LVKQDLEEARQNVSKRMEYISKEI-KRTDDH--ICALENKQEALQENLN 391
+++ K+ G V +++Q+L+ ++ V I E KR++ + A+ N QE +N
Sbjct: 716 AQLEKIEGKVQMLEQELKHKKEEVDSLQISIQDEAHKRSEGEAALLAMTNLNSESQEEVN 775
Query: 392 KLRNDLGKLKLK 427
+L + KLK+K
Sbjct: 776 RLTLETKKLKVK 787
>04_04_0987 + 29938486-29938505,29938667-29938859,29938961-29941036
Length = 762
Score = 28.3 bits (60), Expect = 8.8
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Frame = +2
Query: 269 LEEARQNVSKRMEYISKEIKRTDDHICALENKQ---EALQENLNKLRNDLGKLK 421
LEEA Q+ + E + +K D + L+ K+ EALQ+ + L +++ K K
Sbjct: 341 LEEADQSNILKGESLESAMKELDAKMTLLQEKESEIEALQDKVRSLEDEVAKQK 394
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,680,591
Number of Sequences: 37544
Number of extensions: 303836
Number of successful extensions: 672
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -