Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_F11
         (898 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    26   1.8  
AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcript...    24   5.5  

>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 25.8 bits (54), Expect = 1.8
 Identities = 16/72 (22%), Positives = 35/72 (48%)
 Frame = +2

Query: 257 VKQDLEEARQNVSKRMEYISKEIKRTDDHICALENKQEALQENLNKLRNDLGKLKLKA*K 436
           +KQ  +         ++ +++E K   D + +  NK+  ++EN  K+ ++    K +A K
Sbjct: 388 LKQKADATSSKYLIHLDSVNREQKSDQDRLDSEINKKAQIEENYKKIESE----KNEALK 443

Query: 437 MCELKVKHVYSS 472
             E  + H+ +S
Sbjct: 444 RQEKLIDHIKTS 455


>AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1154

 Score = 24.2 bits (50), Expect = 5.5
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +2

Query: 287  NVSKRMEYISKEIKRTDDHICALENKQEALQENLNKL 397
            NV +  + I+ +++R  D  CA+   Q  L+E  N+L
Sbjct: 1005 NVCEAAKRITSKLQRCWDDECAILAAQAMLEEPANRL 1041


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 742,369
Number of Sequences: 2352
Number of extensions: 12225
Number of successful extensions: 32
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 96747534
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)