Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_F10
(879 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces po... 106 5e-24
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 35 0.013
SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces pomb... 27 2.7
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb... 26 6.1
SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ... 26 6.1
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 26 8.1
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ... 26 8.1
SPAC23C11.10 |||conserved eukaryotic protein|Schizosaccharomyces... 26 8.1
SPAC25H1.08c |||ribosome biogenesis protein Sqt1|Schizosaccharom... 26 8.1
>SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 622
Score = 106 bits (254), Expect = 5e-24
Identities = 57/134 (42%), Positives = 76/134 (56%), Gaps = 2/134 (1%)
Frame = +3
Query: 405 MKYLNVAEKNDAAKNIALHLSKGTSTRREGLSKYNKIYQFKANVMGQ--DCEMVMTSVSG 578
M+ L VAEKN AK++A L G RR+ SKY K Y F N G ++ MTSVSG
Sbjct: 1 MRVLCVAEKNSIAKSVASILGGGHVRRRDTRSKYVKNYDFSFNFGGNVGSSDVTMTSVSG 60
Query: 579 HLLALEFSGTYRTWQTCSPLSLFDAPVFKYCPENYQKIKMTLEREVRSCQGLIIWTDCDR 758
HL F Y +W + LFDA + +N + + +++E R+ Q L IWTDCDR
Sbjct: 61 HLTEASFPSEYSSWSSVPQDVLFDAQIITSVSKNAEVLADNIKKEARNAQYLYIWTDCDR 120
Query: 759 EGENIGFEIIDVCK 800
EGE+IG EI +V +
Sbjct: 121 EGEHIGVEISNVAR 134
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 35.1 bits (77), Expect = 0.013
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Frame = +3
Query: 630 SPLSLFDAPVFKYCPENYQKIKMTLEREVRSCQGLIIWTDCDREGENIGF-EIIDVCKXC 806
S +S+ + VFK +N +K+++ER++RS Q ++ T C +G EI+ + K
Sbjct: 3629 SVISVQEPGVFKQ-KDNCFTLKLSIERQIRSLQEQLLKTLCSSNENIVGTDEIVVLLKNL 3687
Query: 807 QDKFENI*SKXSEITLVSVNR 869
++K E I SE S+NR
Sbjct: 3688 KEKHETIRLAYSESQ--SINR 3706
>SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 27.5 bits (58), Expect = 2.7
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +3
Query: 234 AGIHIYRFNIKILSLCYENNITFIKNMLQCLEKLNSR 344
AG+ ++++ Y+NNI+ N+++C++K N R
Sbjct: 87 AGLKAVGESVQVPLSYYKNNISGTINLIECMKKYNVR 123
>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1919
Score = 26.2 bits (55), Expect = 6.1
Identities = 18/84 (21%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
Frame = +3
Query: 201 FPXIFRVIFSAAGIHIYRF---NIKILSLCYENNITFIKNMLQCLEKLNSRLNRTLCFLV 371
FP I RV A +H+Y + ++L + + ++ +L + + N TL + +
Sbjct: 1664 FPAIVRVDLFATAMHVYEVIMDDQQLLKNSKQELLAALRKLLSTMVEQNDHTCTTLIYTL 1723
Query: 372 NKQIFVNKYSTMKYLNVAEKNDAA 443
+ + T+ + EKN+ A
Sbjct: 1724 FEHLLNIYKETINDSDKKEKNETA 1747
>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 805
Score = 26.2 bits (55), Expect = 6.1
Identities = 10/43 (23%), Positives = 23/43 (53%)
Frame = +3
Query: 186 ILLVTFPXIFRVIFSAAGIHIYRFNIKILSLCYENNITFIKNM 314
+ +VTFP +F ++F G ++ ++ + YE + K++
Sbjct: 398 VAIVTFPFLFAIMFGDLGHGAIMASVALMFVLYEKTLGAKKDL 440
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 25.8 bits (54), Expect = 8.1
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +3
Query: 411 YLNVAEKNDAAKNIALHLSKGTSTRREGLSKYNKIY 518
YLN EK+D AK + L++ E L + N+++
Sbjct: 944 YLNAKEKHDQAKVLVARLTQLLQALEETLRRRNEMW 979
>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 615
Score = 25.8 bits (54), Expect = 8.1
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +3
Query: 402 TMKYLNVAEKNDAAKNIALHLSKGTSTRREGLSKYNKIYQF 524
T + L +K + + + K +S R++G+S NK+ QF
Sbjct: 354 TGEILKPRKKRQESTSSVHRIGKESSDRKDGISGQNKLQQF 394
>SPAC23C11.10 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 265
Score = 25.8 bits (54), Expect = 8.1
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = -2
Query: 233 SRENYSEYXWECYK*NLYPRNIKFKL-HICLTY 138
S +N + WE Y NL R +KF+L +CL +
Sbjct: 121 STKNQLVHKWEQYTNNLNYRTLKFRLGKMCLLF 153
>SPAC25H1.08c |||ribosome biogenesis protein
Sqt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 399
Score = 25.8 bits (54), Expect = 8.1
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -3
Query: 724 QLRTSRSKVILIFW*FSGQYLKTGASNS 641
QL + ++ I W F G Y+ TG +S
Sbjct: 99 QLTGHKDSIVAIDWSFDGTYIATGGMDS 126
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,261,192
Number of Sequences: 5004
Number of extensions: 66923
Number of successful extensions: 175
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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