Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_F10
         (879 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0453 - 3471656-3471819,3472416-3472580,3473062-3473145,347...    93   3e-19
03_03_0098 + 14392509-14392748,14393116-14393196,14393517-143937...    29   3.7  

>03_01_0453 -
           3471656-3471819,3472416-3472580,3473062-3473145,
           3473304-3473375,3473496-3473574,3473894-3473990,
           3474064-3474116,3474257-3474386,3474464-3474498,
           3476108-3476212,3476759-3476833,3477671-3477799,
           3477918-3478097,3478737-3478820,3478943-3479059,
           3479170-3479242,3479316-3479437,3479519-3479641,
           3479917-3479989,3480218-3480396,3480699-3480837,
           3481105-3481259,3481570-3481875
          Length = 912

 Score = 93.1 bits (221), Expect = 3e-19
 Identities = 48/122 (39%), Positives = 71/122 (58%), Gaps = 9/122 (7%)
 Frame = +3

Query: 405 MKYLNVAEKNDAAKNIALHLSK--GTSTRREGLSKYNKIYQFKANVMGQDCEMVMTSVSG 578
           ++ LNVAEK   AK++A  LS+  G    REG S+YN++++F  ++ G+ C M++TSV+G
Sbjct: 10  IRVLNVAEKPSVAKSVAEILSRPSGGMRSREGRSRYNRVFEFDYSIGGRACHMLVTSVTG 69

Query: 579 HLLALEFSGTYRTWQTCSPLSLFDAPVFKYCP------ENYQKIKMTLEREV-RSCQGLI 737
           HL+ LEF   +R W +C P  LF APV K  P      E Y ++   L+R     C   +
Sbjct: 70  HLMELEFDDRFRRWHSCDPADLFHAPVRKSVPQGTALKELYSRVLQELDRGTSHDCYSFL 129

Query: 738 IW 743
            W
Sbjct: 130 NW 131



 Score = 66.5 bits (155), Expect = 3e-11
 Identities = 28/65 (43%), Positives = 40/65 (61%)
 Frame = +3

Query: 684 QKIKMTLEREVRSCQGLIIWTDCDREGENIGFEIIDVCKXCQDKFENI*SKXSEITLVSV 863
           Q IK TLE E R CQ L++W DCDREGENI +E+ID+C     +     ++ S +    +
Sbjct: 203 QDIKRTLEEEARKCQWLVLWLDCDREGENIAYEVIDICAGANSRLNIWRARFSALIDREI 262

Query: 864 NRALQ 878
           + A+Q
Sbjct: 263 HEAVQ 267


>03_03_0098 +
           14392509-14392748,14393116-14393196,14393517-14393767,
           14393887-14394239,14394547-14394848
          Length = 408

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 31/138 (22%), Positives = 56/138 (40%), Gaps = 4/138 (2%)
 Frame = +3

Query: 387 VNKYSTMKYLNVAEKN--DAAKNIALHLSKGTSTRREGLSKYNKIYQFKANVMGQDCEMV 560
           +N   TM  + +  K     A+N+   L    S+ + G ++     QF+   +  D    
Sbjct: 97  INPAFTMDKIKMMTKTMVACAQNMVKELEDQASSNKNGETQVELDKQFQE--LTADIISH 154

Query: 561 MTSVSGHLLALEFSGTYRTWQTCSPLSLFDA--PVFKYCPENYQKIKMTLEREVRSCQGL 734
               S + L +E     +  Q  +  SL +   P F Y P      K+TLE+++R     
Sbjct: 155 TAFGSSYKLGIEAFHAQKELQEIAVKSLLNVQIPGFSYLPTKGNWRKLTLEKKLRGTLMQ 214

Query: 735 IIWTDCDREGENIGFEII 788
           II +    +G   G +++
Sbjct: 215 IIQSRLSSKGSGYGSDLL 232


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,592,496
Number of Sequences: 37544
Number of extensions: 346568
Number of successful extensions: 791
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)