Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_F10
(879 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BT015282-1|AAT94511.1| 1250|Drosophila melanogaster LD04601p pro... 205 5e-53
AF255733-1|AAF71288.1| 1250|Drosophila melanogaster DNA topoisom... 205 5e-53
AE014134-3114|AAF53813.2| 1250|Drosophila melanogaster CG10123-P... 205 5e-53
BT016116-1|AAV37001.1| 875|Drosophila melanogaster LD10035p pro... 90 4e-18
AF099909-1|AAD13219.1| 875|Drosophila melanogaster topoisomeras... 90 4e-18
AE014298-867|AAF46144.1| 875|Drosophila melanogaster CG3458-PA ... 90 4e-18
BT023905-1|ABA81839.1| 2753|Drosophila melanogaster GH18167p pro... 30 3.7
AJ544075-1|CAD66435.1| 2935|Drosophila melanogaster zormin protein. 30 3.7
AE014296-410|ABI31230.1| 3651|Drosophila melanogaster CG33484-PD... 30 3.7
AE014296-409|ABI31228.1| 3090|Drosophila melanogaster CG33484-PB... 30 3.7
AE014296-408|AAF47606.3| 2946|Drosophila melanogaster CG33484-PA... 30 3.7
AE014296-407|ABI31229.1| 2947|Drosophila melanogaster CG33484-PC... 30 3.7
>BT015282-1|AAT94511.1| 1250|Drosophila melanogaster LD04601p
protein.
Length = 1250
Score = 205 bits (501), Expect = 5e-53
Identities = 100/169 (59%), Positives = 121/169 (71%)
Frame = +3
Query: 372 NKQIFVNKYSTMKYLNVAEKNDAAKNIALHLSKGTSTRREGLSKYNKIYQFKANVMGQDC 551
+++ N MKYLNVAEKNDAAK IA LS G + RREG S YNK++ F+A V GQ+
Sbjct: 15 HRRYCANPGQAMKYLNVAEKNDAAKTIAGLLSNGAAQRREGYSVYNKVFDFEAPVRGQNA 74
Query: 552 EMVMTSVSGHLLALEFSGTYRTWQTCSPLSLFDAPVFKYCPENYQKIKMTLEREVRSCQG 731
+MVMTSVSGH++ L F +Y+ W+T P SLFDAPV K +Y+ IK TLEREVR CQG
Sbjct: 75 KMVMTSVSGHMMQLAFQVSYKNWRTVDPRSLFDAPVKKGVGSDYEPIKRTLEREVRGCQG 134
Query: 732 LIIWTDCDREGENIGFEIIDVCKXCQDKFENI*SKXSEITLVSVNRALQ 878
LIIWTDCDREGENIG+EIIDVC+ + + SEIT V+V RALQ
Sbjct: 135 LIIWTDCDREGENIGYEIIDVCRAIKPNISVYRATFSEITTVAVRRALQ 183
>AF255733-1|AAF71288.1| 1250|Drosophila melanogaster DNA
topoisomerase III alpha protein.
Length = 1250
Score = 205 bits (501), Expect = 5e-53
Identities = 100/169 (59%), Positives = 121/169 (71%)
Frame = +3
Query: 372 NKQIFVNKYSTMKYLNVAEKNDAAKNIALHLSKGTSTRREGLSKYNKIYQFKANVMGQDC 551
+++ N MKYLNVAEKNDAAK IA LS G + RREG S YNK++ F+A V GQ+
Sbjct: 15 HRRYCANPGQAMKYLNVAEKNDAAKTIAGLLSNGAAQRREGYSVYNKVFDFEAPVRGQNA 74
Query: 552 EMVMTSVSGHLLALEFSGTYRTWQTCSPLSLFDAPVFKYCPENYQKIKMTLEREVRSCQG 731
+MVMTSVSGH++ L F +Y+ W+T P SLFDAPV K +Y+ IK TLEREVR CQG
Sbjct: 75 KMVMTSVSGHMMQLAFQVSYKNWRTVDPRSLFDAPVEKGVGSDYEPIKRTLEREVRGCQG 134
Query: 732 LIIWTDCDREGENIGFEIIDVCKXCQDKFENI*SKXSEITLVSVNRALQ 878
LIIWTDCDREGENIG+EIIDVC+ + + SEIT V+V RALQ
Sbjct: 135 LIIWTDCDREGENIGYEIIDVCRAIKPNISVYRATFSEITTVAVRRALQ 183
>AE014134-3114|AAF53813.2| 1250|Drosophila melanogaster CG10123-PA
protein.
Length = 1250
Score = 205 bits (501), Expect = 5e-53
Identities = 100/169 (59%), Positives = 121/169 (71%)
Frame = +3
Query: 372 NKQIFVNKYSTMKYLNVAEKNDAAKNIALHLSKGTSTRREGLSKYNKIYQFKANVMGQDC 551
+++ N MKYLNVAEKNDAAK IA LS G + RREG S YNK++ F+A V GQ+
Sbjct: 15 HRRYCANPGQAMKYLNVAEKNDAAKTIAGLLSNGAAQRREGYSVYNKVFDFEAPVRGQNA 74
Query: 552 EMVMTSVSGHLLALEFSGTYRTWQTCSPLSLFDAPVFKYCPENYQKIKMTLEREVRSCQG 731
+MVMTSVSGH++ L F +Y+ W+T P SLFDAPV K +Y+ IK TLEREVR CQG
Sbjct: 75 KMVMTSVSGHMMQLAFQVSYKNWRTVDPRSLFDAPVKKGVGSDYEPIKRTLEREVRGCQG 134
Query: 732 LIIWTDCDREGENIGFEIIDVCKXCQDKFENI*SKXSEITLVSVNRALQ 878
LIIWTDCDREGENIG+EIIDVC+ + + SEIT V+V RALQ
Sbjct: 135 LIIWTDCDREGENIGYEIIDVCRAIKPNISVYRATFSEITTVAVRRALQ 183
>BT016116-1|AAV37001.1| 875|Drosophila melanogaster LD10035p
protein.
Length = 875
Score = 89.8 bits (213), Expect = 4e-18
Identities = 46/130 (35%), Positives = 66/130 (50%), Gaps = 1/130 (0%)
Frame = +3
Query: 414 LNVAEKNDAAKNIALHLSKGTSTRREGLSKYNKIYQFKANVMGQ-DCEMVMTSVSGHLLA 590
L VAEK A ++A LS G T + G +++ N + MTSV GH+++
Sbjct: 5 LMVAEKPSLAASLAGILSNGRCTAKRGTGNGCSTHEWTGNFRNEGSVHFRMTSVCGHVMS 64
Query: 591 LEFSGTYRTWQTCSPLSLFDAPVFKYCPENYQKIKMTLEREVRSCQGLIIWTDCDREGEN 770
L+F+ Y W P+ LF K Q ++ L E R C L++W DCD+EGEN
Sbjct: 65 LDFNKKYNCWDKVDPIQLFGCATEKKETNPKQNMRKFLAHEARGCDYLVLWLDCDKEGEN 124
Query: 771 IGFEIIDVCK 800
I FE++D K
Sbjct: 125 ICFEVMDAVK 134
>AF099909-1|AAD13219.1| 875|Drosophila melanogaster topoisomerase
III protein.
Length = 875
Score = 89.8 bits (213), Expect = 4e-18
Identities = 46/130 (35%), Positives = 66/130 (50%), Gaps = 1/130 (0%)
Frame = +3
Query: 414 LNVAEKNDAAKNIALHLSKGTSTRREGLSKYNKIYQFKANVMGQ-DCEMVMTSVSGHLLA 590
L VAEK A ++A LS G T + G +++ N + MTSV GH+++
Sbjct: 5 LMVAEKPSLAASLAGILSNGRCTAKRGTGNGCSTHEWTGNFRNEGSVHFRMTSVCGHVMS 64
Query: 591 LEFSGTYRTWQTCSPLSLFDAPVFKYCPENYQKIKMTLEREVRSCQGLIIWTDCDREGEN 770
L+F+ Y W P+ LF K Q ++ L E R C L++W DCD+EGEN
Sbjct: 65 LDFNKKYNCWDKVDPIQLFGCATEKKETNPKQNMRKFLAHEARGCDYLVLWLDCDKEGEN 124
Query: 771 IGFEIIDVCK 800
I FE++D K
Sbjct: 125 ICFEVMDAVK 134
>AE014298-867|AAF46144.1| 875|Drosophila melanogaster CG3458-PA
protein.
Length = 875
Score = 89.8 bits (213), Expect = 4e-18
Identities = 46/130 (35%), Positives = 66/130 (50%), Gaps = 1/130 (0%)
Frame = +3
Query: 414 LNVAEKNDAAKNIALHLSKGTSTRREGLSKYNKIYQFKANVMGQ-DCEMVMTSVSGHLLA 590
L VAEK A ++A LS G T + G +++ N + MTSV GH+++
Sbjct: 5 LMVAEKPSLAASLAGILSNGRCTAKRGTGNGCSTHEWTGNFRNEGSVHFRMTSVCGHVMS 64
Query: 591 LEFSGTYRTWQTCSPLSLFDAPVFKYCPENYQKIKMTLEREVRSCQGLIIWTDCDREGEN 770
L+F+ Y W P+ LF K Q ++ L E R C L++W DCD+EGEN
Sbjct: 65 LDFNKKYNCWDKVDPIQLFGCATEKKETNPKQNMRKFLAHEARGCDYLVLWLDCDKEGEN 124
Query: 771 IGFEIIDVCK 800
I FE++D K
Sbjct: 125 ICFEVMDAVK 134
>BT023905-1|ABA81839.1| 2753|Drosophila melanogaster GH18167p
protein.
Length = 2753
Score = 30.3 bits (65), Expect = 3.7
Identities = 21/89 (23%), Positives = 44/89 (49%)
Frame = +3
Query: 318 QCLEKLNSRLNRTLCFLVNKQIFVNKYSTMKYLNVAEKNDAAKNIALHLSKGTSTRREGL 497
QC++K S + ++ L+ ++ V + + ++ +N+ LH +S R L
Sbjct: 722 QCMDKFRSLITQSE--LLIDRVRVLEPPGAREIDTDRILKLLENLRLHFESNSSARMSTL 779
Query: 498 SKYNKIYQFKANVMGQDCEMVMTSVSGHL 584
+ KI QF++++ +D + + SVS L
Sbjct: 780 ERLEKIEQFRSDL--EDIDRSLDSVSQQL 806
>AJ544075-1|CAD66435.1| 2935|Drosophila melanogaster zormin protein.
Length = 2935
Score = 30.3 bits (65), Expect = 3.7
Identities = 21/89 (23%), Positives = 44/89 (49%)
Frame = +3
Query: 318 QCLEKLNSRLNRTLCFLVNKQIFVNKYSTMKYLNVAEKNDAAKNIALHLSKGTSTRREGL 497
QC++K S + ++ L+ ++ V + + ++ +N+ LH +S R L
Sbjct: 904 QCMDKFRSLITQSE--LLIDRVRVLEPPGAREIDTDRILKLLENLRLHFESNSSARMSTL 961
Query: 498 SKYNKIYQFKANVMGQDCEMVMTSVSGHL 584
+ KI QF++++ +D + + SVS L
Sbjct: 962 ERLEKIEQFRSDL--EDIDRSLDSVSQQL 988
>AE014296-410|ABI31230.1| 3651|Drosophila melanogaster CG33484-PD,
isoform D protein.
Length = 3651
Score = 30.3 bits (65), Expect = 3.7
Identities = 21/89 (23%), Positives = 44/89 (49%)
Frame = +3
Query: 318 QCLEKLNSRLNRTLCFLVNKQIFVNKYSTMKYLNVAEKNDAAKNIALHLSKGTSTRREGL 497
QC++K S + ++ L+ ++ V + + ++ +N+ LH +S R L
Sbjct: 915 QCMDKFRSLITQSE--LLIDRVRVLEPPGAREIDTDRILKLLENLRLHFESNSSARMSTL 972
Query: 498 SKYNKIYQFKANVMGQDCEMVMTSVSGHL 584
+ KI QF++++ +D + + SVS L
Sbjct: 973 ERLEKIEQFRSDL--EDIDRSLDSVSQQL 999
>AE014296-409|ABI31228.1| 3090|Drosophila melanogaster CG33484-PB,
isoform B protein.
Length = 3090
Score = 30.3 bits (65), Expect = 3.7
Identities = 21/89 (23%), Positives = 44/89 (49%)
Frame = +3
Query: 318 QCLEKLNSRLNRTLCFLVNKQIFVNKYSTMKYLNVAEKNDAAKNIALHLSKGTSTRREGL 497
QC++K S + ++ L+ ++ V + + ++ +N+ LH +S R L
Sbjct: 915 QCMDKFRSLITQSE--LLIDRVRVLEPPGAREIDTDRILKLLENLRLHFESNSSARMSTL 972
Query: 498 SKYNKIYQFKANVMGQDCEMVMTSVSGHL 584
+ KI QF++++ +D + + SVS L
Sbjct: 973 ERLEKIEQFRSDL--EDIDRSLDSVSQQL 999
>AE014296-408|AAF47606.3| 2946|Drosophila melanogaster CG33484-PA,
isoform A protein.
Length = 2946
Score = 30.3 bits (65), Expect = 3.7
Identities = 21/89 (23%), Positives = 44/89 (49%)
Frame = +3
Query: 318 QCLEKLNSRLNRTLCFLVNKQIFVNKYSTMKYLNVAEKNDAAKNIALHLSKGTSTRREGL 497
QC++K S + ++ L+ ++ V + + ++ +N+ LH +S R L
Sbjct: 915 QCMDKFRSLITQSE--LLIDRVRVLEPPGAREIDTDRILKLLENLRLHFESNSSARMSTL 972
Query: 498 SKYNKIYQFKANVMGQDCEMVMTSVSGHL 584
+ KI QF++++ +D + + SVS L
Sbjct: 973 ERLEKIEQFRSDL--EDIDRSLDSVSQQL 999
>AE014296-407|ABI31229.1| 2947|Drosophila melanogaster CG33484-PC,
isoform C protein.
Length = 2947
Score = 30.3 bits (65), Expect = 3.7
Identities = 21/89 (23%), Positives = 44/89 (49%)
Frame = +3
Query: 318 QCLEKLNSRLNRTLCFLVNKQIFVNKYSTMKYLNVAEKNDAAKNIALHLSKGTSTRREGL 497
QC++K S + ++ L+ ++ V + + ++ +N+ LH +S R L
Sbjct: 915 QCMDKFRSLITQSE--LLIDRVRVLEPPGAREIDTDRILKLLENLRLHFESNSSARMSTL 972
Query: 498 SKYNKIYQFKANVMGQDCEMVMTSVSGHL 584
+ KI QF++++ +D + + SVS L
Sbjct: 973 ERLEKIEQFRSDL--EDIDRSLDSVSQQL 999
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,848,996
Number of Sequences: 53049
Number of extensions: 649522
Number of successful extensions: 1372
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1372
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4270708416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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