Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_F10
         (879 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132860-21|CAB60518.2|  759|Caenorhabditis elegans Hypothetical...   137   1e-32
AF057032-1|AAC13567.1|  759|Caenorhabditis elegans DNA topoisome...   137   1e-32
AL117203-10|CAB60424.2|  855|Caenorhabditis elegans Hypothetical...    88   7e-18
U55375-3|AAC69043.1|  229|Caenorhabditis elegans Hypothetical pr...    32   0.62 
Z73910-1|CAA98134.2|  523|Caenorhabditis elegans Hypothetical pr...    30   1.9  
U58753-6|AAC24440.1|  705|Caenorhabditis elegans Hypothetical pr...    30   2.5  
Z93388-11|CAB07660.2|  319|Caenorhabditis elegans Hypothetical p...    29   4.4  
Z74032-8|CAA98462.3|  325|Caenorhabditis elegans Hypothetical pr...    29   5.8  
AF016444-5|AAB65932.1|  330|Caenorhabditis elegans Serpentine re...    29   5.8  
U64859-7|AAC69095.1|  344|Caenorhabditis elegans Serpentine rece...    28   7.7  

>AL132860-21|CAB60518.2|  759|Caenorhabditis elegans Hypothetical
           protein Y56A3A.27 protein.
          Length = 759

 Score =  137 bits (331), Expect = 1e-32
 Identities = 67/153 (43%), Positives = 91/153 (59%)
 Frame = +3

Query: 414 LNVAEKNDAAKNIALHLSKGTSTRREGLSKYNKIYQFKANVMGQDCEMVMTSVSGHLLAL 593
           L VAEKND AK +A  LS GT+ RREG SK+NKIY     + GQ   + +TSVSGH++  
Sbjct: 5   LFVAEKNDVAKGVAAILSNGTANRREGRSKFNKIYTLNTELFGQQTAISVTSVSGHMMNF 64

Query: 594 EFSGTYRTWQTCSPLSLFDAPVFKYCPENYQKIKMTLEREVRSCQGLIIWTDCDREGENI 773
           +F      WQT S + LF APV        + I+ TL  + +    L++WTDCDREGE I
Sbjct: 65  QFHENMSNWQTASMVELFRAPVRHVVTPEMKLIEQTLREQAQRHDILVVWTDCDREGEAI 124

Query: 774 GFEIIDVCKXCQDKFENI*SKXSEITLVSVNRA 872
           G EI+ VC+    + +   ++ SEIT  ++ RA
Sbjct: 125 GAEIVKVCRDSNRRLDIFRARFSEITKAAITRA 157


>AF057032-1|AAC13567.1|  759|Caenorhabditis elegans DNA
           topoisomerase III protein.
          Length = 759

 Score =  137 bits (331), Expect = 1e-32
 Identities = 67/153 (43%), Positives = 91/153 (59%)
 Frame = +3

Query: 414 LNVAEKNDAAKNIALHLSKGTSTRREGLSKYNKIYQFKANVMGQDCEMVMTSVSGHLLAL 593
           L VAEKND AK +A  LS GT+ RREG SK+NKIY     + GQ   + +TSVSGH++  
Sbjct: 5   LFVAEKNDVAKGVAAILSNGTANRREGRSKFNKIYTLNTELFGQQTAISVTSVSGHMMNF 64

Query: 594 EFSGTYRTWQTCSPLSLFDAPVFKYCPENYQKIKMTLEREVRSCQGLIIWTDCDREGENI 773
           +F      WQT S + LF APV        + I+ TL  + +    L++WTDCDREGE I
Sbjct: 65  QFHENMSNWQTASMVELFRAPVRHVVTPEMKLIEQTLREQAQRHDILVVWTDCDREGEAI 124

Query: 774 GFEIIDVCKXCQDKFENI*SKXSEITLVSVNRA 872
           G EI+ VC+    + +   ++ SEIT  ++ RA
Sbjct: 125 GAEIVKVCRDSNRRLDIFRARFSEITKAAITRA 157


>AL117203-10|CAB60424.2|  855|Caenorhabditis elegans Hypothetical
           protein Y48C3A.14 protein.
          Length = 855

 Score = 88.2 bits (209), Expect = 7e-18
 Identities = 44/134 (32%), Positives = 69/134 (51%)
 Frame = +3

Query: 414 LNVAEKNDAAKNIALHLSKGTSTRREGLSKYNKIYQFKANVMGQDCEMVMTSVSGHLLAL 593
           L VAEK   A +IA  LS G + +R+G +    + ++     G+     +TS  GH+++L
Sbjct: 6   LMVAEKPLLADSIANLLSNGQAKKRKGWNGVCSVSEYDGQFNGRAARFKVTSTCGHVMSL 65

Query: 594 EFSGTYRTWQTCSPLSLFDAPVFKYCPENYQKIKMTLEREVRSCQGLIIWTDCDREGENI 773
           +F   +  W+   P  L+ AP  +       K+   L  E ++   L++W DCD+EGENI
Sbjct: 66  DFPPKFNNWERVDPAELYSAPTQRIEANPKMKMNEFLASEAKNADFLVLWLDCDKEGENI 125

Query: 774 GFEIIDVCKXCQDK 815
            FE+ID  K    K
Sbjct: 126 CFEVIDAVKCAMFK 139


>U55375-3|AAC69043.1|  229|Caenorhabditis elegans Hypothetical
           protein K03E6.4 protein.
          Length = 229

 Score = 31.9 bits (69), Expect = 0.62
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +1

Query: 610 TEPGKPVAHYHCLMHLFSNTAQRITKKLR 696
           TEPGK V   HC +   S+T Q++  KLR
Sbjct: 106 TEPGKHVCRVHCFLPEPSSTVQQLIAKLR 134


>Z73910-1|CAA98134.2|  523|Caenorhabditis elegans Hypothetical
           protein M117.1 protein.
          Length = 523

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -3

Query: 460 CNAIFLAASFFSATFKYFIVEYLFTNICLFTKKQSVLFNLL 338
           C   +  A+  S  F YF++ Y+     L T  + VLF+LL
Sbjct: 422 CGGFYKGAALISRQFSYFVIGYIQLFKSLATLLEPVLFSLL 462


>U58753-6|AAC24440.1|  705|Caenorhabditis elegans Hypothetical
           protein W03B1.8 protein.
          Length = 705

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = +3

Query: 612 RTWQTCSPLSLFDAPVFKYCPENYQKIKMTLEREVRSCQGLIIWTDCDREGE-NIGFEII 788
           R WQ    + ++   +F    ENYQ +    + EV  C+ L++  + D+E E N G +I+
Sbjct: 202 RIWQFMIGMMVY---LFSKSEENYQVLNNNEDEEVGECKKLLMDAESDQEVEYNPGDKIV 258

Query: 789 D 791
           +
Sbjct: 259 E 259


>Z93388-11|CAB07660.2|  319|Caenorhabditis elegans Hypothetical
           protein T10C6.3 protein.
          Length = 319

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -3

Query: 403 VEYLFTNICLFTKKQSVLFNLLFSFSRHCNIFF 305
           + YLF N  +F     ++  LL SF+R C  FF
Sbjct: 93  ISYLFGNFSIFLLPVILISFLLMSFNRFCACFF 125


>Z74032-8|CAA98462.3|  325|Caenorhabditis elegans Hypothetical
           protein F35B12.1 protein.
          Length = 325

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +1

Query: 7   FXYRFDYRESLRFWHNILINCWDVYFKY 90
           F YRF  +  L F+H I + CW VY  Y
Sbjct: 140 FIYRF-VKIILEFFHYIPLECWMVYTSY 166


>AF016444-5|AAB65932.1|  330|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 6 protein.
          Length = 330

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 19/56 (33%), Positives = 28/56 (50%)
 Frame = +3

Query: 567 SVSGHLLALEFSGTYRTWQTCSPLSLFDAPVFKYCPENYQKIKMTLEREVRSCQGL 734
           S S ++  +E SG+Y  +   S + LF     K   EN  KIK TL+  V + Q +
Sbjct: 270 STSTYVAFIELSGSYPLYAVISMVILF-----KRAKENKVKIKKTLQSHVNADQSI 320


>U64859-7|AAC69095.1|  344|Caenorhabditis elegans Serpentine
           receptor, class h protein11 protein.
          Length = 344

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -3

Query: 457 NAIFLAASFFSATFKYFIVEYLFTNI 380
           NA+F  +S   +T+KYFI+ ++  NI
Sbjct: 34  NALFRESSQIFSTYKYFIIVHIIINI 59


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,802,096
Number of Sequences: 27780
Number of extensions: 372746
Number of successful extensions: 955
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 955
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)