Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_F09
         (881 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    25   0.60 
AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory recept...    23   3.2  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    22   5.5  

>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 25.4 bits (53), Expect = 0.60
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -1

Query: 266 PILGAKDDVAPTSPPT 219
           PIL  K  V+PT+PPT
Sbjct: 85  PILAEKVSVSPTTPPT 100


>AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory receptor
           candidate 22 protein.
          Length = 301

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +3

Query: 27  REFLKIFAFQVELPTSLN 80
           RE   IFAFQV + TS+N
Sbjct: 148 REINGIFAFQVLMCTSMN 165


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +3

Query: 6   IPXPFDYREFLKIFAFQVELPTSLNVQAVALAESKL 113
           I  PF   +F+ + A+Q E  T+L ++    A++ L
Sbjct: 169 ISFPFPETQFIAVTAYQNEEVTALKIKYNPFAKAFL 204


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,432
Number of Sequences: 336
Number of extensions: 3624
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24410188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)