Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_F08
         (947 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.02 |imp2||contractile ring protein Imp2|Schizosaccharo...    29   1.3  
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb...    29   1.3  
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |...    27   2.9  
SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo...    26   8.9  
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    26   8.9  

>SPBC11C11.02 |imp2||contractile ring protein
           Imp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 670

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +1

Query: 610 ELVNLYKSH-QIRKLSEDDSSRAYFEYSALLGD 705
           E+ N+ KSH QI +L +DD   A+  Y+A L D
Sbjct: 91  EVDNMAKSHLQISQLLQDDVENAFTRYAASLKD 123


>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 200

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +1

Query: 577 SDPRALSNVIFELVNLYKSHQIRKLSEDDSSRAYFEYSALLGDSL 711
           SDP A+  +     N  KS Q   +++   +R Y E S+L GD +
Sbjct: 126 SDPVAIEEMRRRNQNFVKSQQAELVAQRIGARKYMECSSLTGDGV 170


>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = -1

Query: 170 NCQLSMTLYLLNSISKYL*IAYLHYVGV 87
           NC+L   LYLL+SISK L   Y ++ G+
Sbjct: 54  NCKLP-ALYLLDSISKNLGAPYTYFFGL 80


>SPAC630.05 |gyp7||GTPase activating protein Gyp7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 398 CQFRLLLPYCSKKLKWEIL 454
           C FR+LL Y  ++  WE+L
Sbjct: 604 CFFRMLLIYFKREFDWEVL 622


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = -1

Query: 449 FPISIS*NNKVIADGIGIPLHQVNKIFFQH 360
           F + +   +K+    + IPLHQ   +F  H
Sbjct: 415 FAVPLKEEHKIFLSKVLIPLHQTKSVFLYH 444


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,915,883
Number of Sequences: 5004
Number of extensions: 57248
Number of successful extensions: 128
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 483319012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)