Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_F07
(858 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P0C218 Cluster: Probable ATP-dependent RNA helicase DDX... 56 1e-06
UniRef50_UPI00015B4D43 Cluster: PREDICTED: hypothetical protein;... 55 3e-06
UniRef50_UPI0000D55AB0 Cluster: PREDICTED: similar to Probable A... 54 3e-06
UniRef50_Q8MYE9 Cluster: Similar to Mus musculus (Mouse). DEAD-b... 50 1e-04
UniRef50_Q8R4Z5 Cluster: DEAD-box corepressor DP103 beta; n=5; T... 47 7e-04
UniRef50_Q9UHI6 Cluster: Probable ATP-dependent RNA helicase DDX... 46 0.001
UniRef50_Q17BP5 Cluster: DEAD box ATP-dependent RNA helicase; n=... 38 0.25
UniRef50_P39517 Cluster: ATP-dependent RNA helicase DHH1; n=103;... 38 0.43
UniRef50_Q4T821 Cluster: Chromosome undetermined SCAF7914, whole... 37 0.57
UniRef50_A3QMD4 Cluster: Putative uncharacterized protein mel-46... 36 1.3
UniRef50_Q5KJI2 Cluster: ATP-dependent RNA helicase DHH1; n=4; D... 36 1.3
UniRef50_Q4FSS4 Cluster: Possible ATP-dependent DEAD/DEAH box RN... 34 5.3
UniRef50_Q8IV96 Cluster: DDX6 protein; n=8; Eukaryota|Rep: DDX6 ... 34 5.3
UniRef50_Q9S531 Cluster: DEAD-box protein; n=4; Cystobacterineae... 33 9.2
>UniRef50_P0C218 Cluster: Probable ATP-dependent RNA helicase DDX20;
n=9; Euteleostomi|Rep: Probable ATP-dependent RNA
helicase DDX20 - Danio rerio (Zebrafish) (Brachydanio
rerio)
Length = 761
Score = 56.0 bits (129), Expect = 1e-06
Identities = 27/49 (55%), Positives = 36/49 (73%)
Frame = +3
Query: 654 HDLRNSTRTRDVQIVENVTFTSMLLSEFTLAGLISSGFQKPSPIQLHGV 800
H+L++ TRT DV I V F+S+LLS+ L GL +SGFQ+PSPIQL +
Sbjct: 9 HELQSRTRTDDVLISGGVEFSSLLLSKPVLEGLSASGFQRPSPIQLKAI 57
>UniRef50_UPI00015B4D43 Cluster: PREDICTED: hypothetical protein;
n=1; Nasonia vitripennis|Rep: PREDICTED: hypothetical
protein - Nasonia vitripennis
Length = 990
Score = 54.8 bits (126), Expect = 3e-06
Identities = 30/68 (44%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Frame = +3
Query: 654 HDLRNSTRTRDVQIVENVTFTSMLLSEFTLAGLISSGFQKPSPIQLHGVH*A-MWFRFVT 830
H+L RT D++I E+VTF+ M LS+ L GL++ GF KPSPIQ + F +
Sbjct: 7 HNLSAKERTSDIEIQEDVTFSQMGLSQQVLNGLLNCGFHKPSPIQHKSIPLGRCGFDLIV 66
Query: 831 RSKV*TGK 854
R+K TGK
Sbjct: 67 RAKSGTGK 74
>UniRef50_UPI0000D55AB0 Cluster: PREDICTED: similar to Probable
ATP-dependent RNA helicase DDX20 (DEAD box protein 20)
(DEAD box protein DP 103) (Component of gems 3)
(Gemin-3) (Regulator of steroidogenic factor 1)
(ROSF-1); n=1; Tribolium castaneum|Rep: PREDICTED:
similar to Probable ATP-dependent RNA helicase DDX20
(DEAD box protein 20) (DEAD box protein DP 103)
(Component of gems 3) (Gemin-3) (Regulator of
steroidogenic factor 1) (ROSF-1) - Tribolium castaneum
Length = 688
Score = 54.4 bits (125), Expect = 3e-06
Identities = 30/68 (44%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Frame = +3
Query: 654 HDLRNSTRTRDVQIVENVTFTSMLLSEFTLAGLISSGFQKPSPIQLHGVH*A-MWFRFVT 830
HDL RT+DV + EN++F S+LL + GL SGF+KPSPIQ + F +
Sbjct: 7 HDLDAKERTKDVILDENISFASLLLPDDIKQGLSVSGFKKPSPIQFKAIPLGRCGFDLIV 66
Query: 831 RSKV*TGK 854
+SK TGK
Sbjct: 67 KSKSGTGK 74
>UniRef50_Q8MYE9 Cluster: Similar to Mus musculus (Mouse). DEAD-box
corepressor DP103 alpha; n=2; Dictyostelium
discoideum|Rep: Similar to Mus musculus (Mouse).
DEAD-box corepressor DP103 alpha - Dictyostelium
discoideum (Slime mold)
Length = 837
Score = 49.6 bits (113), Expect = 1e-04
Identities = 20/42 (47%), Positives = 30/42 (71%)
Frame = +3
Query: 675 RTRDVQIVENVTFTSMLLSEFTLAGLISSGFQKPSPIQLHGV 800
RT D++I +N+TF+ +LL + L GL G+Q+PSPIQL +
Sbjct: 33 RTNDIEIEDNITFSELLLQKEVLKGLEDGGYQRPSPIQLKAI 74
>UniRef50_Q8R4Z5 Cluster: DEAD-box corepressor DP103 beta; n=5;
Tetrapoda|Rep: DEAD-box corepressor DP103 beta - Mus
musculus (Mouse)
Length = 505
Score = 46.8 bits (106), Expect = 7e-04
Identities = 23/50 (46%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Frame = +3
Query: 654 HDLRNS-TRTRDVQIVENVTFTSMLLSEFTLAGLISSGFQKPSPIQLHGV 800
HD+ TRT DV + E F S+LLS L GL ++GF++PSP+QL +
Sbjct: 45 HDIGGPRTRTGDVVLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAI 94
>UniRef50_Q9UHI6 Cluster: Probable ATP-dependent RNA helicase DDX20;
n=24; Eumetazoa|Rep: Probable ATP-dependent RNA helicase
DDX20 - Homo sapiens (Human)
Length = 824
Score = 46.0 bits (104), Expect = 0.001
Identities = 21/43 (48%), Positives = 29/43 (67%)
Frame = +3
Query: 672 TRTRDVQIVENVTFTSMLLSEFTLAGLISSGFQKPSPIQLHGV 800
TRT DV + E F S+LLS L GL ++GF++PSP+QL +
Sbjct: 51 TRTGDVLLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAI 93
>UniRef50_Q17BP5 Cluster: DEAD box ATP-dependent RNA helicase; n=2;
Culicidae|Rep: DEAD box ATP-dependent RNA helicase -
Aedes aegypti (Yellowfever mosquito)
Length = 1061
Score = 38.3 bits (85), Expect = 0.25
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = +3
Query: 675 RTRDVQIVENVTFTSMLLSEFTLAGLISSGFQKPSPIQLHGVH*A-MWFRFVTRSKV*TG 851
RT DV+ ++ F+ M LSE L GL + F PSPIQ + A + + ++K TG
Sbjct: 12 RTADVEFDLSLQFSKMFLSEPVLRGLTRNNFTHPSPIQARAIPLAKLGLDLLVQAKSGTG 71
Query: 852 K 854
K
Sbjct: 72 K 72
>UniRef50_P39517 Cluster: ATP-dependent RNA helicase DHH1; n=103;
Eukaryota|Rep: ATP-dependent RNA helicase DHH1 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 506
Score = 37.5 bits (83), Expect = 0.43
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +3
Query: 675 RTRDVQIVENVTFTSMLLSEFTLAGLISSGFQKPSPIQLHGVH*AMWFR-FVTRSKV*TG 851
+T DV + TF L L G+ +GF+KPSPIQ + A+ R + R+K TG
Sbjct: 36 QTDDVLNTKGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTG 95
Query: 852 K 854
K
Sbjct: 96 K 96
>UniRef50_Q4T821 Cluster: Chromosome undetermined SCAF7914, whole
genome shotgun sequence; n=3; Tetraodontidae|Rep:
Chromosome undetermined SCAF7914, whole genome shotgun
sequence - Tetraodon nigroviridis (Green puffer)
Length = 502
Score = 37.1 bits (82), Expect = 0.57
Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +3
Query: 666 NSTRTRDVQIVENVTFTSMLLSEFTLAGLISSGFQKPSPIQLHGVH*AMWFR-FVTRSKV 842
N RT DV + F L L G+ G++KPSPIQ + A+ R + R+K
Sbjct: 76 NRVRTSDVTATKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKN 135
Query: 843 *TGK 854
TGK
Sbjct: 136 GTGK 139
>UniRef50_A3QMD4 Cluster: Putative uncharacterized protein mel-46;
n=2; Caenorhabditis elegans|Rep: Putative
uncharacterized protein mel-46 - Caenorhabditis elegans
Length = 973
Score = 35.9 bits (79), Expect = 1.3
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = +3
Query: 675 RTRDVQIVENVTFTSMLLSEFTLAGLISSGFQKPSPIQLHGVH*AMWFR-FVTRSKV*TG 851
R + + N TF S+++ + TL L +S F +PSP+Q + + R + ++K TG
Sbjct: 12 RGSSIDVQSNCTFESLMIGQKTLERLKNSQFDRPSPVQARAIPVGLLGRDMLVQAKSGTG 71
Query: 852 K 854
K
Sbjct: 72 K 72
>UniRef50_Q5KJI2 Cluster: ATP-dependent RNA helicase DHH1; n=4;
Dikarya|Rep: ATP-dependent RNA helicase DHH1 -
Cryptococcus neoformans (Filobasidiella neoformans)
Length = 625
Score = 35.9 bits (79), Expect = 1.3
Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Frame = +3
Query: 657 DLRNSTRTRDVQIVENVTFTSMLLSEFTLAGLISSGFQKPSPIQLHGVH*AMWFR-FVTR 833
DLR +T DV + F L L G+ ++GF++PSPIQ + A+ R + R
Sbjct: 22 DLR--PQTEDVTATQGSRFEDFGLRRELLMGIYTAGFERPSPIQEQAIPMALTGRDILAR 79
Query: 834 SKV*TGK 854
+K TGK
Sbjct: 80 AKNGTGK 86
>UniRef50_Q4FSS4 Cluster: Possible ATP-dependent DEAD/DEAH box
RNA-helicase; n=4; Gammaproteobacteria|Rep: Possible
ATP-dependent DEAD/DEAH box RNA-helicase - Psychrobacter
arcticum
Length = 567
Score = 33.9 bits (74), Expect = 5.3
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +3
Query: 657 DLRNSTRTRDVQIVENVTFTSMLLSEFTLAGLISSGFQKPSPIQLHGV 800
D N T D VTFT + +++ L+ L SG+ P+PIQ +
Sbjct: 28 DTNNEAATTDATDENKVTFTDLNIAKPILSALERSGYTHPTPIQAEAI 75
>UniRef50_Q8IV96 Cluster: DDX6 protein; n=8; Eukaryota|Rep: DDX6
protein - Homo sapiens (Human)
Length = 187
Score = 33.9 bits (74), Expect = 5.3
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = +3
Query: 657 DLRNSTRTRDVQIVENVTFTSMLLSEFTLAGLISSGFQKPSPIQLHGVH*AMWFR-FVTR 833
DLR +T DV + F L L G+ G++KPSPIQ + A+ R + R
Sbjct: 82 DLR--IKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILAR 139
Query: 834 SKV*TGK 854
+K TGK
Sbjct: 140 AKNGTGK 146
>UniRef50_Q9S531 Cluster: DEAD-box protein; n=4;
Cystobacterineae|Rep: DEAD-box protein - Myxococcus
xanthus
Length = 808
Score = 33.1 bits (72), Expect = 9.2
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +3
Query: 678 TRDVQIVENVTFTSMLLSEFTLAGLISSGFQKPSPIQLHGVH*AMWFR-FVTRSKV*TGK 854
TR + + ++ F M LSE L G+ P+P+Q A+ + + RSK TGK
Sbjct: 20 TRPAEYIADIGFDDMNLSEPIRLALAERGYTNPTPVQARAFRPAIEGKDLIVRSKTGTGK 79
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 800,295,091
Number of Sequences: 1657284
Number of extensions: 15296416
Number of successful extensions: 30280
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 29348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30268
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 75833093035
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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