Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_F07
         (858 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha...    36   0.007
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar...    27   4.5  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   6.0  
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac...    26   6.0  

>SPBC776.09 |ste13||ATP-dependent RNA helicase
           Ste13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 35.9 bits (79), Expect = 0.007
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +3

Query: 675 RTRDVQIVENVTFTSMLLSEFTLAGLISSGFQKPSPIQLHGVH*AMWFR-FVTRSKV*TG 851
           +T DV       F    L    L G+  +GF++PSPIQ   +  A+  R  + R+K  TG
Sbjct: 34  KTEDVTKTRGTEFEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTG 93

Query: 852 K 854
           K
Sbjct: 94  K 94


>SPAC1006.07 |||translation initiation factor
           eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 392

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 708 TFTSMLLSEFTLAGLISSGFQKPSPIQLHGV 800
           TF  M L    L G+ + GF++PS IQ   +
Sbjct: 20  TFDDMNLKPELLRGIYAYGFERPSAIQQRAI 50


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -2

Query: 251  SFTKIFSVDFMEDPEKLRPAVLFHFP 174
            SF  IFS  F E+PE  +  + F  P
Sbjct: 1836 SFDNIFSYIFSEEPESKKSPIWFELP 1861


>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 848

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 711 FTSMLLSEFTLAGLISSGFQKPSPIQ 788
           F SM L++  L  +   GF+ P+PIQ
Sbjct: 71  FQSMGLNQTLLRAIFKKGFKAPTPIQ 96


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,480,276
Number of Sequences: 5004
Number of extensions: 71231
Number of successful extensions: 158
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)