Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_F07
         (858 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0553 - 18720436-18720494,18721102-18721106,18721136-187212...    35   0.096
04_04_0613 + 26617677-26617963,26618726-26618786,26619598-266198...    35   0.096
02_05_0096 + 25785995-25786311,25786716-25786776,25787825-257880...    35   0.096
06_03_1284 - 28988287-28988922,28989335-28989765,28989850-289899...    31   1.6  
02_01_0355 + 2558792-2558862,2558993-2559099,2559185-2559615,256...    31   1.6  
06_01_0263 + 1936927-1936936,1937031-1937305,1937727-1938079,193...    30   2.7  

>10_08_0553 -
           18720436-18720494,18721102-18721106,18721136-18721257,
           18721390-18721478,18722136-18722316,18722403-18722654,
           18722755-18722993,18723680-18723914,18724072-18724132,
           18724632-18724987
          Length = 532

 Score = 34.7 bits (76), Expect = 0.096
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +3

Query: 675 RTRDVQIVENVTFTSMLLSEFTLAGLISSGFQKPSPIQLHGVH*AM-WFRFVTRSKV*TG 851
           RT DV   +   F    L    L G+   GF++PSPIQ   +  A+     + R+K  TG
Sbjct: 137 RTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTG 196

Query: 852 K 854
           K
Sbjct: 197 K 197


>04_04_0613 +
           26617677-26617963,26618726-26618786,26619598-26619832,
           26619958-26620196,26620493-26620744,26620844-26621024,
           26621810-26621898,26622200-26622273,26622365-26622443
          Length = 498

 Score = 34.7 bits (76), Expect = 0.096
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +3

Query: 675 RTRDVQIVENVTFTSMLLSEFTLAGLISSGFQKPSPIQLHGVH*AM-WFRFVTRSKV*TG 851
           RT DV   +   F    L    L G+   GF++PSPIQ   +  A+     + R+K  TG
Sbjct: 114 RTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTG 173

Query: 852 K 854
           K
Sbjct: 174 K 174


>02_05_0096 +
           25785995-25786311,25786716-25786776,25787825-25788059,
           25788292-25788530,25789700-25789951,25790043-25790223,
           25790864-25790952,25791269-25791342,25791481-25791584,
           25791919-25791957,25792324-25792436
          Length = 567

 Score = 34.7 bits (76), Expect = 0.096
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +3

Query: 675 RTRDVQIVENVTFTSMLLSEFTLAGLISSGFQKPSPIQLHGVH*AM-WFRFVTRSKV*TG 851
           RT DV   +   F    L    L G+   GF++PSPIQ   +  A+     + R+K  TG
Sbjct: 124 RTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTG 183

Query: 852 K 854
           K
Sbjct: 184 K 184


>06_03_1284 -
           28988287-28988922,28989335-28989765,28989850-28989956,
           28990066-28990136
          Length = 414

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3

Query: 708 TFTSMLLSEFTLAGLISSGFQKPSPIQLHGV 800
           +F  M L E  L G+ + GF+KPS IQ  G+
Sbjct: 42  SFDDMGLQENLLRGIYAYGFEKPSAIQQRGI 72


>02_01_0355 +
           2558792-2558862,2558993-2559099,2559185-2559615,
           2560100-2560735
          Length = 414

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3

Query: 708 TFTSMLLSEFTLAGLISSGFQKPSPIQLHGV 800
           +F  M L E  L G+ + GF+KPS IQ  G+
Sbjct: 42  SFDDMGLQENLLRGIYAYGFEKPSAIQQRGI 72


>06_01_0263 +
           1936927-1936936,1937031-1937305,1937727-1938079,
           1938598-1938715,1938823-1938946,1939389-1939608,
           1939948-1940017,1940083-1940136,1940536-1940604,
           1941138-1941194,1941503-1941575,1942037-1942080,
           1942629-1942751,1943092-1943321,1943552-1943660,
           1944196-1944339,1944443-1944604,1944921-1945197,
           1945326-1945486,1945591-1945782,1946789-1946971,
           1946986-1947063,1947187-1947366,1947476-1947562
          Length = 1130

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 19/62 (30%), Positives = 30/62 (48%)
 Frame = -3

Query: 778 DGFWNPDDINPASVNSERSMEVNVTFSTI*TSRVLVLFLKS*X*RHNGNSDSLLSLKSGR 599
           D   +  D N   +NS + +++   F ++    ++V  L     RHNGN+ S LSL S  
Sbjct: 156 DAICSVRDKNVRPLNSFKGLDLTTVFGSL-GEGLMVFLLVDEILRHNGNTRSYLSLFSRM 214

Query: 598 FD 593
            D
Sbjct: 215 LD 216


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,929,571
Number of Sequences: 37544
Number of extensions: 397905
Number of successful extensions: 681
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)