Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_F07
         (858 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU051652-1|ABS85191.1|  973|Caenorhabditis elegans MEL-46 protein.     36   0.037
CU457744-1|CAM36366.2|  973|Caenorhabditis elegans Hypothetical ...    36   0.037
AC006605-1|AAK85443.1|  430|Caenorhabditis elegans Conserved ger...    35   0.085
Z12116-1|CAA78102.1|  402|Caenorhabditis elegans protein ( C.ele...    30   2.4  
U13876-3|AAA21170.1|  402|Caenorhabditis elegans Initiation fact...    30   2.4  
AF039720-12|AAB96704.1|  399|Caenorhabditis elegans Hypothetical...    30   2.4  
AC024844-2|AAK29954.2|  399|Caenorhabditis elegans Hypothetical ...    29   3.2  
AL033514-1|CAA22081.2|  275|Caenorhabditis elegans Hypothetical ...    28   7.4  
AF172092-1|AAD48876.1|  275|Caenorhabditis elegans homeodomain p...    28   7.4  

>EU051652-1|ABS85191.1|  973|Caenorhabditis elegans MEL-46 protein.
          Length = 973

 Score = 35.9 bits (79), Expect = 0.037
 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
 Frame = +3

Query: 675 RTRDVQIVENVTFTSMLLSEFTLAGLISSGFQKPSPIQLHGVH*AMWFR-FVTRSKV*TG 851
           R   + +  N TF S+++ + TL  L +S F +PSP+Q   +   +  R  + ++K  TG
Sbjct: 12  RGSSIDVQSNCTFESLMIGQKTLERLKNSQFDRPSPVQARAIPVGLLGRDMLVQAKSGTG 71

Query: 852 K 854
           K
Sbjct: 72  K 72


>CU457744-1|CAM36366.2|  973|Caenorhabditis elegans Hypothetical
           protein T06A10.1 protein.
          Length = 973

 Score = 35.9 bits (79), Expect = 0.037
 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
 Frame = +3

Query: 675 RTRDVQIVENVTFTSMLLSEFTLAGLISSGFQKPSPIQLHGVH*AMWFR-FVTRSKV*TG 851
           R   + +  N TF S+++ + TL  L +S F +PSP+Q   +   +  R  + ++K  TG
Sbjct: 12  RGSSIDVQSNCTFESLMIGQKTLERLKNSQFDRPSPVQARAIPVGLLGRDMLVQAKSGTG 71

Query: 852 K 854
           K
Sbjct: 72  K 72


>AC006605-1|AAK85443.1|  430|Caenorhabditis elegans Conserved
           germline helicase protein1 protein.
          Length = 430

 Score = 34.7 bits (76), Expect = 0.085
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +3

Query: 675 RTRDVQIVENVTFTSMLLSEFTLAGLISSGFQKPSPIQLHGVH*AMWFR-FVTRSKV*TG 851
           +T DV   + V F    L    L G+   G++KPSPIQ   +  A+  +  + R+K  TG
Sbjct: 33  KTADVTDTKGVEFEDFCLGRDLLMGIFEKGWEKPSPIQEASIGVALTGQDILARAKNGTG 92

Query: 852 K 854
           K
Sbjct: 93  K 93


>Z12116-1|CAA78102.1|  402|Caenorhabditis elegans protein (
           C.elegans mRNA for eIF-4A homologue. ).
          Length = 402

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = +3

Query: 690 QIVENVTFTSMLLSEFTLAGLISSGFQKPSPIQLHGV 800
           Q+VE+  F  M L E  L G+   GF+KPS IQ   +
Sbjct: 26  QVVES--FDDMELKEELLRGIYGFGFEKPSAIQKRAI 60


>U13876-3|AAA21170.1|  402|Caenorhabditis elegans Initiation factor
           protein 1, isoforma protein.
          Length = 402

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = +3

Query: 690 QIVENVTFTSMLLSEFTLAGLISSGFQKPSPIQLHGV 800
           Q+VE+  F  M L E  L G+   GF+KPS IQ   +
Sbjct: 26  QVVES--FDDMELKEELLRGIYGFGFEKPSAIQKRAI 60


>AF039720-12|AAB96704.1|  399|Caenorhabditis elegans Hypothetical
           protein F33D11.10 protein.
          Length = 399

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +3

Query: 708 TFTSMLLSEFTLAGLISSGFQKPSPIQLHGV 800
           TF  M L E  L G+ + GF+KPS IQ   V
Sbjct: 27  TFDKMGLREDLLRGIYAYGFEKPSAIQQRAV 57


>AC024844-2|AAK29954.2|  399|Caenorhabditis elegans Hypothetical
           protein Y65B4A.6 protein.
          Length = 399

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +3

Query: 708 TFTSMLLSEFTLAGLISSGFQKPSPIQLHGV 800
           TF  M L E  L G+ + GF+KPS IQ   +
Sbjct: 27  TFDKMGLREDLLRGIYAYGFEKPSAIQQRAI 57


>AL033514-1|CAA22081.2|  275|Caenorhabditis elegans Hypothetical
           protein Y75B8A.1 protein.
          Length = 275

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +2

Query: 434 KKNRLFPKARTLNVFKEYLYNCF 502
           KK + + KA+TL + KE+LYN +
Sbjct: 201 KKRKPYTKAQTLELEKEFLYNTY 223


>AF172092-1|AAD48876.1|  275|Caenorhabditis elegans homeodomain
           protein PHP-3 protein.
          Length = 275

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +2

Query: 434 KKNRLFPKARTLNVFKEYLYNCF 502
           KK + + KA+TL + KE+LYN +
Sbjct: 201 KKRKPYTKAQTLELEKEFLYNTY 223


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,850,088
Number of Sequences: 27780
Number of extensions: 386618
Number of successful extensions: 802
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2139963672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)