Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_F05
         (903 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces pom...    32   0.13 
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa...    29   0.68 
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    26   6.4  

>SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 31.9 bits (69), Expect = 0.13
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 502 GSGCSKTCLRSSVQCHHCHCFLPHTGIHCH 591
           GS  S +   ++V CH CH + P    HCH
Sbjct: 170 GSTRSDSVFVNTVYCHTCHLYRPPRASHCH 199


>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 639

 Score = 29.5 bits (63), Expect = 0.68
 Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = +1

Query: 574 TGIHCHPGTDTETNNEPRE--HRLRHRALQRGLHVRRAAEQGRARHXAGRTIKRRERVS 744
           T  H    TD ETN+  R   H  RHR  + G H R  +E+  +R    R+  R ER S
Sbjct: 10  TSTHKFNETDRETNHSRRHRHHHSRHRESKHGRHDR--SERPSSREAGDRS--RHERFS 64


>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +1

Query: 508 GCSKTCLRSSVQCHHCHCFLPHTGIHCH 591
           GCS       VQC  CH +  +T  HCH
Sbjct: 141 GCSHYMRNCKVQCFDCHEW--YTCRHCH 166


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,232,953
Number of Sequences: 5004
Number of extensions: 33733
Number of successful extensions: 77
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)