Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_F05
         (903 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0305 - 42631214-42631330,42631423-42631527,42633208-426332...    30   2.9  
09_04_0350 + 16899076-16900164                                         29   3.8  

>01_07_0305 -
           42631214-42631330,42631423-42631527,42633208-42633216,
           42635198-42636142,42636349-42636450,42637210-42637302
          Length = 456

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 16/29 (55%), Positives = 19/29 (65%)
 Frame = +1

Query: 646 RALQRGLHVRRAAEQGRARHXAGRTIKRR 732
           RAL+R  H RRAA    ARH  GR ++RR
Sbjct: 163 RALERLAH-RRAARHVGARHGPGRRVQRR 190


>09_04_0350 + 16899076-16900164
          Length = 362

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -3

Query: 256 HSQWQRLVGCRKWRQWQRALRRTRFDHHMQH 164
           H +W++  GC +WR+   A+   R   H +H
Sbjct: 252 HGEWRQRSGCWQWRRLTEAVAGGRDSSHRRH 282


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,395,720
Number of Sequences: 37544
Number of extensions: 275173
Number of successful extensions: 922
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 922
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)