Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_F05
         (903 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13341-1|CAA73785.1|  310|Homo sapiens matrilin-3 precursor prot...    31   7.6  
BC139907-1|AAI39908.1|  486|Homo sapiens matrilin 3 protein.           31   7.6  
BC094707-1|AAH94707.1|  106|Homo sapiens SMR3B protein protein.        31   7.6  
AJ224741-1|CAA12110.1|  486|Homo sapiens matrilin-3 protein.           31   7.6  
AJ001047-1|CAA04501.1|  303|Homo sapiens Matrilin-3 protein.           31   7.6  
AC079145-2|AAX88937.1|  486|Homo sapiens unknown protein.              31   7.6  

>Y13341-1|CAA73785.1|  310|Homo sapiens matrilin-3 precursor
           protein.
          Length = 310

 Score = 30.7 bits (66), Expect = 7.6
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +1

Query: 481 QPRCSPKGSGCSKTCLRSSVQCHHCHCFLPHT 576
           Q +C+    GC   C+      HHC C+  +T
Sbjct: 173 QDKCALGTHGCQHICVNDRTGSHHCECYEGYT 204


>BC139907-1|AAI39908.1|  486|Homo sapiens matrilin 3 protein.
          Length = 486

 Score = 30.7 bits (66), Expect = 7.6
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +1

Query: 481 QPRCSPKGSGCSKTCLRSSVQCHHCHCFLPHT 576
           Q +C+    GC   C+      HHC C+  +T
Sbjct: 349 QDKCALGTHGCQHICVNDRTGSHHCECYEGYT 380


>BC094707-1|AAH94707.1|  106|Homo sapiens SMR3B protein protein.
          Length = 106

 Score = 30.7 bits (66), Expect = 7.6
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 5/56 (8%)
 Frame = +1

Query: 454 PASYAQGHIQP--RCSPKGSGCSKTC---LRSSVQCHHCHCFLPHTGIHCHPGTDT 606
           P  Y  G I P   C+P  + CS+      R    C++C C+  +   HC   T T
Sbjct: 51  PPPYGPGRIPPPYSCTPNMNNCSRCHHHHKRHHYPCNYCFCYPKYEFQHCFQETFT 106


>AJ224741-1|CAA12110.1|  486|Homo sapiens matrilin-3 protein.
          Length = 486

 Score = 30.7 bits (66), Expect = 7.6
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +1

Query: 481 QPRCSPKGSGCSKTCLRSSVQCHHCHCFLPHT 576
           Q +C+    GC   C+      HHC C+  +T
Sbjct: 349 QDKCALGTHGCQHICVNDRTGSHHCECYEGYT 380


>AJ001047-1|CAA04501.1|  303|Homo sapiens Matrilin-3 protein.
          Length = 303

 Score = 30.7 bits (66), Expect = 7.6
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +1

Query: 481 QPRCSPKGSGCSKTCLRSSVQCHHCHCFLPHT 576
           Q +C+    GC   C+      HHC C+  +T
Sbjct: 166 QDKCALGTHGCQHICVNDRTGSHHCECYEGYT 197


>AC079145-2|AAX88937.1|  486|Homo sapiens unknown protein.
          Length = 486

 Score = 30.7 bits (66), Expect = 7.6
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +1

Query: 481 QPRCSPKGSGCSKTCLRSSVQCHHCHCFLPHT 576
           Q +C+    GC   C+      HHC C+  +T
Sbjct: 349 QDKCALGTHGCQHICVNDRTGSHHCECYEGYT 380


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,494,132
Number of Sequences: 237096
Number of extensions: 1465434
Number of successful extensions: 4784
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4777
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11659288620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)