Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_F05
         (903 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80815-2|AAB37995.1| 1372|Caenorhabditis elegans Hypothetical pr...    31   1.5  
U50312-5|AAA92322.1|  369|Caenorhabditis elegans Hypothetical pr...    30   2.0  
Z83120-9|CAB05589.2|  773|Caenorhabditis elegans Hypothetical pr...    30   2.6  
Z81515-11|CAB04199.2|  773|Caenorhabditis elegans Hypothetical p...    30   2.6  
AF011893-1|AAC27124.1|  773|Caenorhabditis elegans maternal-effe...    30   2.6  
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l...    29   3.4  
U42839-7|AAC69012.1| 1722|Caenorhabditis elegans Drosophila crum...    28   7.9  

>U80815-2|AAB37995.1| 1372|Caenorhabditis elegans Hypothetical
           protein W02C12.1 protein.
          Length = 1372

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 13/49 (26%), Positives = 20/49 (40%)
 Frame = +1

Query: 475 HIQPRCSPKGSGCSKTCLRSSVQCHHCHCFLPHTGIHCHPGTDTETNNE 621
           H+   C+ +    + TC       +HC C L   G+HC    D    N+
Sbjct: 139 HLVDHCAKQPCHNNATCTNMGAT-YHCDCTLGFDGVHCEMNIDECAENQ 186


>U50312-5|AAA92322.1|  369|Caenorhabditis elegans Hypothetical
           protein B0222.5 protein.
          Length = 369

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +1

Query: 502 GSGCSKTCLRSSVQCHH--CHCFLPHTGIHCHPGTDTETNN 618
           G  C++     +VQC+   C+C  PHT +  +   DT TNN
Sbjct: 40  GLKCNENGYYETVQCNSESCYCVTPHTALVAY---DTRTNN 77


>Z83120-9|CAB05589.2|  773|Caenorhabditis elegans Hypothetical
           protein R06A4.7 protein.
          Length = 773

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
 Frame = -1

Query: 468 CI*RRCGVCRFSCRC-IICRLWLWGCRCRVG 379
           C  R  GVC + C+C I C     GC C  G
Sbjct: 544 CACRENGVCSYMCKCDINCSQRFPGCNCAAG 574


>Z81515-11|CAB04199.2|  773|Caenorhabditis elegans Hypothetical
           protein R06A4.7 protein.
          Length = 773

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
 Frame = -1

Query: 468 CI*RRCGVCRFSCRC-IICRLWLWGCRCRVG 379
           C  R  GVC + C+C I C     GC C  G
Sbjct: 544 CACRENGVCSYMCKCDINCSQRFPGCNCAAG 574


>AF011893-1|AAC27124.1|  773|Caenorhabditis elegans maternal-effect
           sterile 2 protein.
          Length = 773

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
 Frame = -1

Query: 468 CI*RRCGVCRFSCRC-IICRLWLWGCRCRVG 379
           C  R  GVC + C+C I C     GC C  G
Sbjct: 544 CACRENGVCSYMCKCDINCSQRFPGCNCAAG 574


>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
            lipoprotein receptorrelated protein 2 protein.
          Length = 2192

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 3/60 (5%)
 Frame = +1

Query: 439  PAYSTPASYAQGHIQPRCSPKGSGCSKTCLRSSVQCH---HCHCFLPHTGIHCHPGTDTE 609
            P+  T +S A    +  C P+GS  +  C +    C     C C    TG HC    D +
Sbjct: 1704 PSNYTQSSCATNVCEGVCGPRGSCKTVPCPKDEPHCRSYSFCECDKGWTGPHCRHKADAK 1763


>U42839-7|AAC69012.1| 1722|Caenorhabditis elegans Drosophila crumbs
           homolog protein 1 protein.
          Length = 1722

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 6/54 (11%)
 Frame = +1

Query: 469 QGHIQPRCSPKGSGCSKTCLRSSVQC------HHCHCFLPHTGIHCHPGTDTET 612
           +G   P C PK SGC+    ++   C      + CHC     G+HC    +  T
Sbjct: 394 EGFDGPFCEPK-SGCTINPCQNGGTCQDADGQYFCHCTSGFGGVHCETVDEPST 446


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,032,473
Number of Sequences: 27780
Number of extensions: 212287
Number of successful extensions: 733
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2297313942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)