Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_F05
         (903 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   3.8  
DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    22   6.7  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    22   6.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   8.8  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 7/20 (35%), Positives = 10/20 (50%)
 Frame = +1

Query: 562 FLPHTGIHCHPGTDTETNNE 621
           +LP  G HC PG   +   +
Sbjct: 241 YLPSGGCHCKPGYQADVEKQ 260


>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +3

Query: 351 ECVLPTGSCCLPDS 392
           +C +  GSC  PDS
Sbjct: 47  DCFIDAGSCLTPDS 60


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +3

Query: 351 ECVLPTGSCCLPDS 392
           +C +  GSC  PDS
Sbjct: 47  DCFIDAGSCLTPDS 60


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -3

Query: 244 QRLVGCRKWRQWQRAL 197
           + L+G R+W+Q+Q  L
Sbjct: 38  EELMGRRRWKQYQDTL 53


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,549
Number of Sequences: 438
Number of extensions: 2694
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29267238
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)