Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_F04
         (1011 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ...    65   3e-09
UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3; ...    61   4e-08
UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep: Alpha-h...    54   8e-06
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE...    51   4e-05
UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9; ...    41   0.058
UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular organi...    40   0.10 

>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 147

 Score = 64.9 bits (151), Expect = 3e-09
 Identities = 42/83 (50%), Positives = 47/83 (56%)
 Frame = +3

Query: 555 GALPIPRSLTRXARSFGCGXRYQLTQRR*YGYPQNQGITQEKTCXQKAXKRPXTVKRPXC 734
           G +P+PRSLTR ARSFGCG RY+LT           G   E T  +K   +     RP  
Sbjct: 34  GDIPLPRSLTRYARSFGCGERYRLTD--------GDGNFLEDT--RKTLSKEEI--RPRR 81

Query: 735 WRFSIGSAPLTSITKIDXQXXGG 803
            RFSIGSAPLTSI K D Q  GG
Sbjct: 82  SRFSIGSAPLTSIAKSDAQISGG 104


>UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3;
           root|Rep: Putative uncharacterized protein - Escherichia
           coli
          Length = 61

 Score = 61.3 bits (142), Expect = 4e-08
 Identities = 29/42 (69%), Positives = 30/42 (71%)
 Frame = -2

Query: 707 PFXGLLVTCFFLXYPLILWITVLPPLSELIPLAAAEXPXXAS 582
           P    L+TC F  YPLILWITVLPPLSEL PLAA E P  AS
Sbjct: 19  PVLCFLLTCSFRLYPLILWITVLPPLSELTPLAAVERPSVAS 60


>UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep:
           Alpha-hemolysin - Aeromonas hydrophila
          Length = 59

 Score = 53.6 bits (123), Expect = 8e-06
 Identities = 26/30 (86%), Positives = 27/30 (90%)
 Frame = +2

Query: 596 VXRLRXAVSAHSKAVIRLSTKSGDNXGKNM 685
           V RLR AVSAHSKAVIRLST+SGDN GKNM
Sbjct: 30  VVRLRRAVSAHSKAVIRLSTESGDNAGKNM 59


>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
           Myxococcus xanthus
          Length = 486

 Score = 51.2 bits (117), Expect = 4e-05
 Identities = 29/57 (50%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
 Frame = +3

Query: 507 CINXSANARGKAVXVLGALPIPRSLTRXARSFGCGXRYQL-TQRR*YGYPQNQGITQ 674
           CI   A AR +AV VL ALP+ RS TR  RS GCG      +  R YG PQ QG+ Q
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCGGAVSAHSPGRPYGDPQPQGMAQ 322


>UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9;
           root|Rep: Putative uncharacterized protein - Salmonella
           typhimurium
          Length = 127

 Score = 40.7 bits (91), Expect = 0.058
 Identities = 19/22 (86%), Positives = 19/22 (86%)
 Frame = +3

Query: 738 RFSIGSAPLTSITKIDXQXXGG 803
           RFSIGSAPLTSITKID Q  GG
Sbjct: 15  RFSIGSAPLTSITKIDAQVRGG 36


>UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular
           organisms|Rep: Predicted protein - Nematostella
           vectensis
          Length = 97

 Score = 39.9 bits (89), Expect = 0.10
 Identities = 20/29 (68%), Positives = 21/29 (72%)
 Frame = +3

Query: 717 VKRPXCWRFSIGSAPLTSITKIDXQXXGG 803
           V+ P   RFSIGSAPLTSITK D Q  GG
Sbjct: 44  VRGPRQSRFSIGSAPLTSITKSDAQISGG 72


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 492,176,797
Number of Sequences: 1657284
Number of extensions: 5577663
Number of successful extensions: 8213
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8051
length of database: 575,637,011
effective HSP length: 101
effective length of database: 408,251,327
effective search space used: 95939061845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)