Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_F02
(1058 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 31 0.36
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 28 2.5
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 28 2.5
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 30.7 bits (66), Expect = 0.36
Identities = 19/63 (30%), Positives = 20/63 (31%)
Frame = +1
Query: 664 GXXXPQXPXATPPGRXNDPAPNXXXVXPXXXPXPXXXIPXXAPXXXXGAPPXRWXPPPXS 843
G P P +TPP R AP P P AP G P P P S
Sbjct: 1679 GGMAPAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPAS 1738
Query: 844 VPP 852
P
Sbjct: 1739 SAP 1741
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 27.9 bits (59), Expect = 2.5
Identities = 19/72 (26%), Positives = 19/72 (26%), Gaps = 2/72 (2%)
Frame = +1
Query: 664 GXXXPQXPXATPPGRXNDPAPNXXXVXPXXXPXPXXXIPXX--APXXXXGAPPXRWXPPP 837
G P P PG P P P P P P P PPP
Sbjct: 204 GEHMPPPPMHHKPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 263
Query: 838 XSVPPXXHXXPP 873
P H PP
Sbjct: 264 MHHEPGEHMPPP 275
Score = 27.9 bits (59), Expect = 2.5
Identities = 19/72 (26%), Positives = 19/72 (26%), Gaps = 2/72 (2%)
Frame = +1
Query: 664 GXXXPQXPXATPPGRXNDPAPNXXXVXPXXXPXPXXXIPXX--APXXXXGAPPXRWXPPP 837
G P P PG P P P P P P P PPP
Sbjct: 217 GEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 276
Query: 838 XSVPPXXHXXPP 873
P H PP
Sbjct: 277 MHHEPGEHMPPP 288
Score = 27.9 bits (59), Expect = 2.5
Identities = 19/72 (26%), Positives = 19/72 (26%), Gaps = 2/72 (2%)
Frame = +1
Query: 664 GXXXPQXPXATPPGRXNDPAPNXXXVXPXXXPXPXXXIPXX--APXXXXGAPPXRWXPPP 837
G P P PG P P P P P P P PPP
Sbjct: 230 GEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 289
Query: 838 XSVPPXXHXXPP 873
P H PP
Sbjct: 290 MHHEPGEHMPPP 301
Score = 27.9 bits (59), Expect = 2.5
Identities = 19/72 (26%), Positives = 19/72 (26%), Gaps = 2/72 (2%)
Frame = +1
Query: 664 GXXXPQXPXATPPGRXNDPAPNXXXVXPXXXPXPXXXIPXX--APXXXXGAPPXRWXPPP 837
G P P PG P P P P P P P PPP
Sbjct: 243 GEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 302
Query: 838 XSVPPXXHXXPP 873
P H PP
Sbjct: 303 MHHEPGEHMPPP 314
Score = 27.9 bits (59), Expect = 2.5
Identities = 19/72 (26%), Positives = 19/72 (26%), Gaps = 2/72 (2%)
Frame = +1
Query: 664 GXXXPQXPXATPPGRXNDPAPNXXXVXPXXXPXPXXXIPXX--APXXXXGAPPXRWXPPP 837
G P P PG P P P P P P P PPP
Sbjct: 256 GEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 315
Query: 838 XSVPPXXHXXPP 873
P H PP
Sbjct: 316 MHHEPGEHMPPP 327
Score = 27.9 bits (59), Expect = 2.5
Identities = 19/72 (26%), Positives = 19/72 (26%), Gaps = 2/72 (2%)
Frame = +1
Query: 664 GXXXPQXPXATPPGRXNDPAPNXXXVXPXXXPXPXXXIPXX--APXXXXGAPPXRWXPPP 837
G P P PG P P P P P P P PPP
Sbjct: 269 GEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 328
Query: 838 XSVPPXXHXXPP 873
P H PP
Sbjct: 329 MHHEPGEHMPPP 340
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.9 bits (59), Expect = 2.5
Identities = 20/73 (27%), Positives = 23/73 (31%), Gaps = 2/73 (2%)
Frame = +1
Query: 640 PXXRXPXSGXXXPQXPXATPPGRXNDPAPNXXXVXPXXXPXPXXXIPXXAPXXXXGAP-- 813
P P P P + PP P P + P P P AP P
Sbjct: 139 PPTSAPPRPSIPPPSPASAPPIPSKAP-PIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPM 197
Query: 814 PXRWXPPPXSVPP 852
P + PPP S P
Sbjct: 198 PPKVPPPPLSQAP 210
Score = 26.6 bits (56), Expect = 5.9
Identities = 19/67 (28%), Positives = 24/67 (35%), Gaps = 4/67 (5%)
Frame = +1
Query: 685 PXATPPGRXNDPAPNXXXVXPXXXPXPXXXIPXXAPXXXXGAPPXRWXPP----PXSVPP 852
P + P R + P P+ P P IP P A P + P P +VPP
Sbjct: 139 PPTSAPPRPSIPPPSPASAPPIPSKAPP--IPSSLPPPAQPAAPVKSPPSAPSLPSAVPP 196
Query: 853 XXHXXPP 873
PP
Sbjct: 197 MPPKVPP 203
Score = 26.2 bits (55), Expect = 7.8
Identities = 20/66 (30%), Positives = 22/66 (33%), Gaps = 4/66 (6%)
Frame = +1
Query: 691 ATPPGRXNDPAPNXXXVXPXXXPXPXXXIPXX----APXXXXGAPPXRWXPPPXSVPPXX 858
A PP P P P P P IP AP APP PP + P
Sbjct: 122 AAPPSAPAPPTPQSELRPPTSAP-PRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAP 180
Query: 859 HXXPPT 876
PP+
Sbjct: 181 VKSPPS 186
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,580,120
Number of Sequences: 5004
Number of extensions: 14369
Number of successful extensions: 37
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 557214894
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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