Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_E24
         (910 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual      46   1e-05
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    28   1.6  
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    27   4.9  
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos...    26   6.4  
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc...    26   8.5  

>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 45.6 bits (103), Expect = 1e-05
 Identities = 21/61 (34%), Positives = 28/61 (45%)
 Frame = +1

Query: 568 KECAGCGGKIVERFLLHALDRYWHHGCLKCTCCGQALADMGRSFYFKGGMILCKNDYTRM 747
           K C  CGG +    ++ A  +  H  C KC  C Q L  +G  FY++ G   C  DY   
Sbjct: 256 KSCHSCGGSLRAGRIISASGKKLHPQCFKCDTCSQNLEHVG--FYYREGKFYCHLDYHEQ 313

Query: 748 F 750
           F
Sbjct: 314 F 314


>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +1

Query: 496 PSSPEASFA-ANGHDYPHNNNNPALKECAGCGGKIVERFLLHALD 627
           PS+  +S+  ++ HD+ H NN  + +  +   G IV   LL ALD
Sbjct: 327 PSNSYSSYQHSHVHDFIHKNNTHSNRVLSQSSGPIVRPSLLAALD 371


>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 16/53 (30%), Positives = 23/53 (43%)
 Frame = +1

Query: 508 EASFAANGHDYPHNNNNPALKECAGCGGKIVERFLLHALDRYWHHGCLKCTCC 666
           +  + ++  D P N  N +   C  C   + E  +L    R  H GCL CT C
Sbjct: 463 QEGYDSSSFDMPLNLANASSDLCYVCHSALEEDCVLLGEIRC-HIGCLSCTKC 514


>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 532

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 94  SSVPSKTTTFSEVVKTVLFRSFRLKVYCDPPLT 192
           S +PS+T++FS   ++V F    L +  DP +T
Sbjct: 282 SRLPSRTSSFSSKHRSVTFSPPDLAILFDPSIT 314


>SPAC31A2.14 |||WD repeat protein, human WRDR48
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 14/54 (25%), Positives = 26/54 (48%)
 Frame = +3

Query: 705 QGWDDIMQKRLYENVRFRXRVRSLRASDTSQRIXDENERAPQTVXVFQIKCXAC 866
           Q WD + +KR+ + V     VR +  SD  + I   +  A  T+ ++ ++   C
Sbjct: 199 QLWDCVSKKRITDLVGHTDNVRDILISDDGRTILTASSDA--TIKLWSLRAQKC 250


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,317,836
Number of Sequences: 5004
Number of extensions: 61997
Number of successful extensions: 150
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)