Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_E24
(910 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0383 + 23656041-23656096,23657189-23657255,23657599-236577... 37 0.025
03_02_0490 - 8840577-8840914,8841009-8841067,8841168-8841283,884... 37 0.025
12_02_0992 + 25083397-25083537,25084198-25084228,25084971-250851... 36 0.059
06_01_0579 + 4099039-4099086,4099798-4099848,4100151-4100286,410... 36 0.059
06_01_0926 - 7139220-7139318,7139394-7139478,7139573-7139643,713... 31 1.7
02_03_0290 + 17344173-17344514 31 1.7
11_01_0302 + 2261489-2261738,2261917-2262064,2262124-2262205,226... 30 2.2
07_03_1151 + 24385272-24386543 29 5.1
03_06_0369 + 33425251-33425778,33425864-33426051,33426152-334262... 29 5.1
01_03_0117 + 12684729-12685886,12685978-12686145,12686292-126863... 29 5.1
11_06_0730 - 26728241-26729335,26729998-26730660 29 6.7
09_02_0546 - 10454404-10455687 29 6.7
>03_05_0383 +
23656041-23656096,23657189-23657255,23657599-23657745,
23658094-23658178,23658380-23658551,23660056-23660176,
23660431-23660550,23660861-23661073,23661154-23661213,
23661306-23661424,23661609-23661667,23661798-23662132
Length = 517
Score = 36.7 bits (81), Expect = 0.025
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +1
Query: 541 PHNNNNPALKECAGCGGKIVERFLLHALDRYWHHGCLKCTCCGQALAD 684
P+ + L+ CAGC I + L +D WH C +C C + +++
Sbjct: 167 PYIFPSTGLRVCAGCKTPIGQGRFLSCMDSVWHPQCFRCFACDRPISE 214
>03_02_0490 -
8840577-8840914,8841009-8841067,8841168-8841283,
8841578-8841640,8841826-8842038,8842211-8842330,
8842453-8842578,8842593-8842749,8842830-8842962,
8843054-8843138,8843305-8843421
Length = 508
Score = 36.7 bits (81), Expect = 0.025
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +1
Query: 574 CAGCGGKIVERFLLHALDRYWHHGCLKCTCCGQALADMGRSF 699
C GC +I L L YWH C +C+ C + +M +F
Sbjct: 114 CGGCKHEIGHGHYLSCLGMYWHPQCFRCSSCRHPIREMEVTF 155
>12_02_0992 +
25083397-25083537,25084198-25084228,25084971-25085139,
25085228-25085291,25085408-25085474,25086543-25086586,
25086835-25086922,25087079-25087238,25087659-25087779,
25087859-25087942,25088043-25088162,25088689-25088901,
25088995-25089054,25089144-25089262,25089407-25089465,
25089585-25089919
Length = 624
Score = 35.5 bits (78), Expect = 0.059
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +1
Query: 568 KECAGCGGKIVERFLLHALDRYWHHGCLKCTCCGQALAD 684
+ CAGC I L +D WH C +C C + +++
Sbjct: 255 RTCAGCKNPIGHGRFLSCMDSVWHPQCFRCFACNKPISE 293
>06_01_0579 +
4099039-4099086,4099798-4099848,4100151-4100286,
4100287-4100401,4100496-4100528,4101037-4101166,
4101663-4101751,4102042-4102148,4102238-4102309,
4102384-4102764,4104907-4105064,4105581-4105674,
4106082-4106089,4106297-4106387,4107136-4107289,
4108257-4108377,4108468-4108551,4108946-4109065,
4109181-4109393,4109482-4109544,4109668-4109783,
4110132-4110190,4111126-4111445
Length = 920
Score = 35.5 bits (78), Expect = 0.059
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +1
Query: 568 KECAGCGGKIVERFLLHALDRYWHHGCLKCTCCGQALAD 684
+ CAGC +I L + WH C +C C Q + D
Sbjct: 556 RTCAGCHSEIGHGRFLSCMGAVWHPECFRCHACNQPIYD 594
>06_01_0926 -
7139220-7139318,7139394-7139478,7139573-7139643,
7139996-7140076,7140805-7140895,7141242-7141330,
7141749-7141802,7141906-7142085,7142175-7142237,
7142575-7142705,7142807-7142900,7143343-7143684,
7143957-7144348,7145010-7148487,7149101-7149187,
7149324-7149367,7149495-7149591,7150429-7150572
Length = 1873
Score = 30.7 bits (66), Expect = 1.7
Identities = 17/63 (26%), Positives = 28/63 (44%)
Frame = +1
Query: 568 KECAGCGGKIVERFLLHALDRYWHHGCLKCTCCGQALADMGRSFYFKGGMILCKNDYTRM 747
++C CG + L A R +H C +CT C L ++ G++ CK Y ++
Sbjct: 11 QKCDSCGRTVYPVEELAADGRVYHRPCFRCTHCKATL--QFSNYSSVEGVLYCKPHYDQI 68
Query: 748 FGS 756
S
Sbjct: 69 LKS 71
>02_03_0290 + 17344173-17344514
Length = 113
Score = 30.7 bits (66), Expect = 1.7
Identities = 24/77 (31%), Positives = 31/77 (40%)
Frame = +1
Query: 436 ASALSMNPHYHGYAELSSPHPSSPEASFAANGHDYPHNNNNPALKECAGCGGKIVERFLL 615
A ALS A +S H A A +GH P + + A + G ++ER L
Sbjct: 13 AVALSTIDGVVSVAAAASDHDRVGAAKRARDGHLLPRSEEHDADADACGWSSAVMERSL- 71
Query: 616 HALDRYWHHGCLKCTCC 666
AL R GC CC
Sbjct: 72 -ALRR--RRGCASSPCC 85
>11_01_0302 +
2261489-2261738,2261917-2262064,2262124-2262205,
2262501-2262566,2262609-2262686,2262794-2262808,
2263618-2263764
Length = 261
Score = 30.3 bits (65), Expect = 2.2
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = +3
Query: 612 PSRPRQILASRLPKMHMLRSSPRGHGKILLFQGWDDIMQKRLY--ENVRFRXRVRSLRAS 785
PSR +A+R ++ M + P G G+++ G D + RL+ + R + R +
Sbjct: 29 PSRLASGIAARWHRLRMCSTPPAGAGEVVRHPGADSLEMDRLHRRRHRRLKGEARGAFSL 88
Query: 786 DTSQRI 803
+TS +I
Sbjct: 89 ETSLKI 94
>07_03_1151 + 24385272-24386543
Length = 423
Score = 29.1 bits (62), Expect = 5.1
Identities = 19/50 (38%), Positives = 25/50 (50%)
Frame = +1
Query: 433 AASALSMNPHYHGYAELSSPHPSSPEASFAANGHDYPHNNNNPALKECAG 582
AA+A + P YA LS+ PS+ S AA D NN + A +E G
Sbjct: 334 AAAAPAPEPSSETYASLSTLSPSASPGSAAAGIGDRKANNKSSAEEEKFG 383
>03_06_0369 +
33425251-33425778,33425864-33426051,33426152-33426251,
33426366-33426578,33426616-33426822,33426908-33427095,
33427234-33427492
Length = 560
Score = 29.1 bits (62), Expect = 5.1
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +1
Query: 622 LDRYWHHGCLKCTCCGQALADM 687
LDRYW H ++CT C AL M
Sbjct: 473 LDRYWSH-VMQCTSCSGALKKM 493
>01_03_0117 +
12684729-12685886,12685978-12686145,12686292-12686336,
12686438-12687280
Length = 737
Score = 29.1 bits (62), Expect = 5.1
Identities = 20/60 (33%), Positives = 28/60 (46%)
Frame = +1
Query: 442 ALSMNPHYHGYAELSSPHPSSPEASFAANGHDYPHNNNNPALKECAGCGGKIVERFLLHA 621
A +M P H AE +P P++P A A P N+++ C G GG I F + A
Sbjct: 270 APTMPPPAHAPAETPAP-PTTPPALPPATTAPSPKNSSSSPPPPCTGGGGGISNVFDVRA 328
>11_06_0730 - 26728241-26729335,26729998-26730660
Length = 585
Score = 28.7 bits (61), Expect = 6.7
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -1
Query: 886 RWDPHLEHAXHFIWKTXTVCGARSFSSXIRWLVSLARKLRTR 761
+W PH++ A H KT + R ++ + W L R LR+R
Sbjct: 113 KWHPHIDDAIH-ACKTSWI--GRCITTLLEWAQGLYRSLRSR 151
>09_02_0546 - 10454404-10455687
Length = 427
Score = 28.7 bits (61), Expect = 6.7
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +3
Query: 807 DENERAPQTVXVFQIKCXACSKCG 878
DE+E++PQ +I+ ACS+CG
Sbjct: 184 DEDEKSPQGFNQNKIELKACSRCG 207
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,944,794
Number of Sequences: 37544
Number of extensions: 483369
Number of successful extensions: 1378
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1378
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2577242800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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