Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_E24
         (910 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    27   0.24 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    24   1.7  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    23   5.1  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    23   5.1  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 27.1 bits (57), Expect = 0.24
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +1

Query: 433 AASALSMNPHYHGYAELSSPHPSSPEASFAA 525
           AA+  S +P Y G    SSP PSSP + F++
Sbjct: 73  AAAITSTSPSYPGGGS-SSPSPSSPSSFFSS 102


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +2

Query: 56  FGVXDXKRCKGRXRRSPQKQLLF-PKLSKQFC 148
           +GV   + CKG  RRS Q+++ + P    Q C
Sbjct: 79  YGVHSCEGCKGFFRRSIQQKIQYRPCTKNQQC 110


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +2

Query: 56  FGVXDXKRCKGRXRRSPQKQLLFPKLSKQFC 148
           +GV   + CKG  +R+ +K L +    ++ C
Sbjct: 122 YGVYSCEGCKGFFKRTVRKDLSYACREEKSC 152


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +2

Query: 56  FGVXDXKRCKGRXRRSPQKQLLFPKLSKQFC 148
           +GV   + CKG  +R+ +K L +    ++ C
Sbjct: 122 YGVYSCEGCKGFFKRTVRKDLSYACREEKSC 152


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 229,936
Number of Sequences: 438
Number of extensions: 4241
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29509116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)