Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_E20
         (864 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces...    69   9e-13
SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual        47   4e-06
SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual    37   0.003
SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase |Schizosaccha...    30   0.37 
SPCC622.06c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual        28   1.5  
SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr 1...    27   3.4  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    27   3.4  
SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyce...    26   6.0  
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm...    26   7.9  

>SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 471

 Score = 68.9 bits (161), Expect = 9e-13
 Identities = 36/110 (32%), Positives = 62/110 (56%)
 Frame = +3

Query: 306 IQSIELNAFTTITDDEAESHAIESEKRLYVDRKPKTLDGITIGIKDNFCTSNIPTTCGSE 485
           +   ++ + T+I   E    +     +L +++K   L    I +K+N CT    TT  S 
Sbjct: 21  LNDAKIKSLTSINSAEYLYDSFVEISKLPLEKK-LPLKWKLITVKENICTKTNLTTAASN 79

Query: 486 MLKNFVPTYNATVYARLRKAGACLVGKCNLDEFAMGSGTVDSIFGPTRNP 635
           MLK++   ++A++   L+KAG  ++GK N+DEFAMG  + +++FG T NP
Sbjct: 80  MLKDYNSPFDASIVESLKKAGGIILGKTNMDEFAMGVKSENNLFGRTVNP 129



 Score = 59.7 bits (138), Expect = 5e-10
 Identities = 26/45 (57%), Positives = 31/45 (68%)
 Frame = +1

Query: 715 CVAAIGSDTGGSTRNPAALCGVVGLXPSYGLXSRYGLIPXVNSMD 849
           C A++GSDTGGS R PAA  G VG  PS+G  SRYG++   NS D
Sbjct: 154 CYASVGSDTGGSIRLPAAYVGCVGFKPSFGRISRYGMLAFANSFD 198


>SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 583

 Score = 46.8 bits (106), Expect = 4e-06
 Identities = 22/42 (52%), Positives = 28/42 (66%)
 Frame = +1

Query: 724 AIGSDTGGSTRNPAALCGVVGLXPSYGLXSRYGLIPXVNSMD 849
           A+G++T GS  +PA   GVVGL P+ GL SRYG+IP     D
Sbjct: 238 ALGTETDGSIIDPAMRNGVVGLKPTVGLTSRYGVIPESEHQD 279


>SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 533

 Score = 37.1 bits (82), Expect = 0.003
 Identities = 20/35 (57%), Positives = 22/35 (62%)
 Frame = +1

Query: 718 VAAIGSDTGGSTRNPAALCGVVGLXPSYGLXSRYG 822
           V  IGSD GGS R+PAA  G+ GL PS    SR G
Sbjct: 221 VLGIGSDIGGSIRSPAANNGLFGLRPSTLRLSRKG 255



 Score = 35.1 bits (77), Expect = 0.013
 Identities = 30/131 (22%), Positives = 53/131 (40%), Gaps = 2/131 (1%)
 Frame = +3

Query: 252 RDKILTPTSFVD-LCLQKAIQSIELNAFTTITDDEAESHAIE-SEKRLYVDRKPKTLDGI 425
           +D+ +T    V   C + AI    +N    +  +EA + A E  E           L G+
Sbjct: 68  KDRKVTSVELVTAFCKRAAIAQQLVNCVNELFYEEALARAAELDEYYAKTGSLVGPLHGV 127

Query: 426 TIGIKDNFCTSNIPTTCGSEMLKNFVPTYNATVYARLRKAGACLVGKCNLDEFAMGSGTV 605
            + +K++    N   T       N +   ++ + A +RKAGA    +    +  M   T 
Sbjct: 128 PVSVKEHISIKNHTATASFLAKANIIAEKDSDLVATVRKAGAVFYCRTPQPQAIMHLETS 187

Query: 606 DSIFGPTRNPW 638
            ++ G T NP+
Sbjct: 188 SNLTGVTVNPF 198


>SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 30.3 bits (65), Expect = 0.37
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = +1

Query: 712 SCVAAIGSDTGGSTRNPAALCGVVGLXPSYGLXS 813
           SC   IG+D GGS R P+   G+  L PS G  S
Sbjct: 222 SC-CGIGTDIGGSIRIPSCFQGLYALKPSTGRIS 254


>SPCC622.06c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 122

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 25/89 (28%), Positives = 37/89 (41%)
 Frame = +3

Query: 309 QSIELNAFTTITDDEAESHAIESEKRLYVDRKPKTLDGITIGIKDNFCTSNIPTTCGSEM 488
           +SIEL  F ++  DEA    I   K+ Y   K ++ DGI   I   F  S +     S M
Sbjct: 5   ESIELQEFQSLLQDEAYEELI--NKKTYEAIKYRSNDGILPIIITLFIFSFVI----SRM 58

Query: 489 LKNFVPTYNATVYARLRKAGACLVGKCNL 575
           +  F+  +N   Y  L      ++    L
Sbjct: 59  IIFFISLFNKNTYCELPAVADAIINSIAL 87


>SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 273 SALVFYHDTXLCISFIV*DDNLFIIFVNK 187
           S +VFYH +  C+  +  DD+LF I   K
Sbjct: 91  SLMVFYHSSGWCMRGVRDDDSLFKILTPK 119


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
            protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 19/68 (27%), Positives = 34/68 (50%)
 Frame = +2

Query: 41   DFEGTYNPTEERNHSLNLAALISAVIQIIFLLTSVMHCLCYLL*LCDINLLTKIMNKLSS 220
            D +G Y  T++R  SLN      +   ++ LL++++  L  L  L   +LL  ++ K   
Sbjct: 1349 DLQGLYEFTQQRLQSLNTETGEKSAPLLLMLLSAILMRLKDLEFLETKDLLRHVVLKYID 1408

Query: 221  YTIKEIHR 244
            +T  EI +
Sbjct: 1409 HTNPEIRK 1416


>SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 760

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 50  GTYNPTEERNHSLNLAALISAVIQIIFLL 136
           G YNP     H++NL A + +   I+FL+
Sbjct: 515 GRYNPKVAPIHNINLPAALLSRFDILFLI 543


>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1292

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -2

Query: 419 VQSLRFSVDVKSFFAF 372
           V S+R SVD+K FF+F
Sbjct: 654 VDSMRSSVDIKQFFSF 669


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,351,410
Number of Sequences: 5004
Number of extensions: 68076
Number of successful extensions: 192
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)