Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_E17
(983 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 39 0.001
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 33 0.082
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 31 0.33
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 30 0.44
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 3.1
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 5.4
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc... 27 5.4
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 26 7.1
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 39.1 bits (87), Expect = 0.001
Identities = 24/62 (38%), Positives = 24/62 (38%), Gaps = 2/62 (3%)
Frame = -2
Query: 973 GGGGGGGPPXXXPGXXXPKXGXGXXXGGXGMXGGXRGXXGG--GXPXGFXGXXXXXGPXX 800
G GGG G P PG G G G GG G GG G P GF G G
Sbjct: 192 GFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGL 251
Query: 799 GG 794
GG
Sbjct: 252 GG 253
Score = 36.3 bits (80), Expect = 0.007
Identities = 21/48 (43%), Positives = 21/48 (43%)
Frame = -2
Query: 970 GGGGGGPPXXXPGXXXPKXGXGXXXGGXGMXGGXRGXXGGGXPXGFXG 827
GG GGGP G G G GG G GG G GGG P G G
Sbjct: 224 GGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGG-PGGHGG 270
Score = 35.1 bits (77), Expect = 0.015
Identities = 26/61 (42%), Positives = 26/61 (42%)
Frame = -2
Query: 973 GGGGGGGPPXXXPGXXXPKXGXGXXXGGXGMXGGXRGXXGGGXPXGFXGXXXXXGPXXGG 794
G GG GG P G G G GG G GG G GGG P GF G GP G
Sbjct: 222 GHGGFGGGPGGFEG------GPGGFGGGPGGFGGGLGGFGGG-PGGFGG-----GPGGHG 269
Query: 793 G 791
G
Sbjct: 270 G 270
Score = 26.6 bits (56), Expect = 5.4
Identities = 16/38 (42%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Frame = -3
Query: 894 GGGXXG--GGXGVXXGGGPRXGXEAXGXXXXPXGGGGG 787
GGG G GG G GG G G P G GGG
Sbjct: 227 GGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGG 264
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 32.7 bits (71), Expect = 0.082
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = -3
Query: 507 PXIRXPPPPXAPXFPXXWXXPPXLPPXPFAXXEAXXLP 394
P + PPPP AP P PP PP P A +P
Sbjct: 1710 PPMSVPPPPSAPPMP---AGPPSAPPPPLPASSAPSVP 1744
Score = 29.1 bits (62), Expect = 1.0
Identities = 20/74 (27%), Positives = 22/74 (29%)
Frame = +3
Query: 732 GGLXXXNXKXPPXXXX*KXXPPPXXGPNXXXXPXNPXGXPPPXXPLXPPXXPXPPXXIPX 911
GG+ + P PP P P P PPP P PP PP P
Sbjct: 1679 GGMAPAHPVSTPPVRPQSAAPPQMSAPTP---PPPPMSVPPP--PSAPPMPAGPPSAPPP 1733
Query: 912 PXXGXXXPGXXXGG 953
P P G
Sbjct: 1734 PLPASSAPSVPNPG 1747
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 30.7 bits (66), Expect = 0.33
Identities = 16/42 (38%), Positives = 17/42 (40%)
Frame = -2
Query: 973 GGGGGGGPPXXXPGXXXPKXGXGXXXGGXGMXGGXRGXXGGG 848
GGG GG G + G G GG G G RG GG
Sbjct: 29 GGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGGAKGG 70
Score = 28.3 bits (60), Expect = 1.8
Identities = 15/40 (37%), Positives = 15/40 (37%)
Frame = -3
Query: 906 GXXXGGGXXGGGXGVXXGGGPRXGXEAXGXXXXPXGGGGG 787
G G G GGG G GGG G GG GG
Sbjct: 20 GFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGG 59
Score = 28.3 bits (60), Expect = 1.8
Identities = 15/41 (36%), Positives = 16/41 (39%)
Frame = -2
Query: 973 GGGGGGGPPXXXPGXXXPKXGXGXXXGGXGMXGGXRGXXGG 851
GG GGG G + G G G G GG G GG
Sbjct: 26 GGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGG 66
Score = 27.5 bits (58), Expect = 3.1
Identities = 17/44 (38%), Positives = 17/44 (38%)
Frame = -3
Query: 918 RXXXGXXXGGGXXGGGXGVXXGGGPRXGXEAXGXXXXPXGGGGG 787
R G GG GG G G G R G A G GG GG
Sbjct: 25 RGGFGGGRGGARGGGRGGARGGRGGRGG--ARGGRGGSSGGRGG 66
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 30.3 bits (65), Expect = 0.44
Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Frame = -3
Query: 558 PPLXXXFPAXRXXSXRGPXIRXP-PPPXAPXFPXXWXXPPXLPPXPFA 418
PP+ P+ R R P + P PPP P PP PP P A
Sbjct: 230 PPIPPSIPSSRPPE-RVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIA 276
Score = 25.8 bits (54), Expect = 9.4
Identities = 17/56 (30%), Positives = 18/56 (32%), Gaps = 2/56 (3%)
Frame = +2
Query: 560 PPGXSXP*XXAPXXPPXXGITRPAPGGXXXXQP-PPXGXTXQKXP-PXGGAPTQKL 721
PP AP PP I P P G P PP P P AP +
Sbjct: 436 PPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAPVASI 491
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 27.5 bits (58), Expect = 3.1
Identities = 17/56 (30%), Positives = 18/56 (32%), Gaps = 6/56 (10%)
Frame = +3
Query: 756 KXPPXXXX*KXXPPPXXGPNXXXXPXNPXGXPPPXXP------LXPPXXPXPPXXI 905
K PP P P P P G PPP P PP P PP +
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAV 785
Score = 26.2 bits (55), Expect = 7.1
Identities = 13/38 (34%), Positives = 14/38 (36%)
Frame = -3
Query: 537 PAXRXXSXRGPXIRXPPPPXAPXFPXXWXXPPXLPPXP 424
PA P + PPPP P PP PP P
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 26.6 bits (56), Expect = 5.4
Identities = 31/128 (24%), Positives = 33/128 (25%), Gaps = 2/128 (1%)
Frame = +2
Query: 557 GPPGXSXP*XXAPXXP-PXXGITR-PAPGGXXXXQPPPXGXTXQKXPPXGGAPTQKLXKX 730
G P P AP P P + PAP G P P P G P K
Sbjct: 1090 GIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPV-PKPSVAAPPVPVPSGAPPVPKPSVA 1148
Query: 731 RWTXXXQXEXPPXXXXIKXPPPPPXGXXXXXXXXXXXXXXXXXXTPXPPPHXPPPXXXPX 910
PP PP P P PPP PP P
Sbjct: 1149 APPVPAPSGAPPVPKPSVAAPPVPA----PSSGIPPVPKPAAGVPPVPPPSEAPPVPKPS 1204
Query: 911 XXLXXXPP 934
+ PP
Sbjct: 1205 VGVPPVPP 1212
>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 379
Score = 26.6 bits (56), Expect = 5.4
Identities = 17/45 (37%), Positives = 17/45 (37%), Gaps = 3/45 (6%)
Frame = -2
Query: 973 GGGGGGGPPXXXPGXXXPKX---GXGXXXGGXGMXGGXRGXXGGG 848
GGGG GG G G G G GM GG GGG
Sbjct: 135 GGGGMGGGMGGMGGMDDDMDMDGGFGTRTRGGGMPGGFANMFGGG 179
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.2 bits (55), Expect = 7.1
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = -3
Query: 507 PXIRXPPPPXAPXFPXXWXXPPXLPP 430
P PPPP P F PP PP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPP 30
Score = 25.8 bits (54), Expect = 9.4
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +3
Query: 828 PXNPXGXPPPXXPLXPPXXPXPP 896
P NP PPP PP P PP
Sbjct: 6 PGNPPPPPPPPG-FEPPSQPPPP 27
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,866,885
Number of Sequences: 5004
Number of extensions: 27312
Number of successful extensions: 174
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 507285244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -