Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_E14
         (930 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       30   0.034
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    26   0.42 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    24   1.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   5.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   5.2  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   6.9  
U15954-1|AAA67442.1|   53|Apis mellifera abaecin precursor protein.    22   9.1  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   9.1  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   9.1  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 29.9 bits (64), Expect = 0.034
 Identities = 16/45 (35%), Positives = 16/45 (35%), Gaps = 2/45 (4%)
 Frame = -1

Query: 537 PXXGRPXXXXPXPXPPXAPPGGXPXXPPPXPPP--PPXXPSXPPP 409
           P  G P         P AP  G P  P   PPP  PP  P    P
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 29.1 bits (62), Expect = 0.060
 Identities = 17/44 (38%), Positives = 18/44 (40%), Gaps = 5/44 (11%)
 Frame = -1

Query: 525 RPXXXXPXPXP-----PXAPPGGXPXXPPPXPPPPPXXPSXPPP 409
           +P    P P P     P AP  G P  P P   PPP  P   PP
Sbjct: 15  QPSSGAPGPQPSPHQSPQAPQRGSP--PNPSQGPPPGGPPGAPP 56



 Score = 24.6 bits (51), Expect = 1.3
 Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
 Frame = +2

Query: 734 PXXPXK-NPPVPPXXPPXXPLPGPXPXPSPXKPRXXP 841
           P  P + +PP P   PP    PG  P  +P +    P
Sbjct: 31  PQAPQRGSPPNPSQGPPPGGPPGAPPSQNPSQMMISP 67



 Score = 23.8 bits (49), Expect = 2.3
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +3

Query: 540 PGSXPPXGGXPGPP 581
           P   PP GG PG P
Sbjct: 42  PSQGPPPGGPPGAP 55



 Score = 22.2 bits (45), Expect = 6.9
 Identities = 10/29 (34%), Positives = 10/29 (34%)
 Frame = +3

Query: 828 PVPXHSPHXXKPGXXPXXPPRXXXPPXPG 914
           P P  SPH          PP     P PG
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPG 49



 Score = 21.8 bits (44), Expect = 9.1
 Identities = 10/33 (30%), Positives = 11/33 (33%)
 Frame = +2

Query: 743 PXKNPPVPPXXPPXXPLPGPXPXPSPXKPRXXP 841
           P  +P   P  P     P P   P P  P   P
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAP 55


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 26.2 bits (55), Expect = 0.42
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = -1

Query: 477 GGXPXXPPPXPPPPPXXPSXP 415
           G     P P PPPPP   S P
Sbjct: 333 GDSDTPPKPAPPPPPPSSSGP 353



 Score = 25.0 bits (52), Expect = 0.98
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -1

Query: 456 PPXPPPPPXXPSXPPP 409
           PP P PPP  PS   P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 22.6 bits (46), Expect = 5.2
 Identities = 9/21 (42%), Positives = 9/21 (42%)
 Frame = -1

Query: 474 GXPXXPPPXPPPPPXXPSXPP 412
           G    PP   PPPP   S  P
Sbjct: 333 GDSDTPPKPAPPPPPPSSSGP 353


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 12/33 (36%), Positives = 12/33 (36%)
 Frame = +2

Query: 404 GPGGGXXGXXGGGGGXGGGXXGXPPGGAXGGXG 502
           GPG    G    G   G    G   GG  GG G
Sbjct: 21  GPGSSSAGGVVTGASGGSIVVGANNGGGGGGLG 53


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -1

Query: 459  PPPXPPPP 436
            PPP PPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 3.0
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -1

Query: 456  PPXPPPPP 433
            PP PPPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 21.8 bits (44), Expect = 9.1
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -1

Query: 447  PPPPPXXPS 421
            PPPPP  PS
Sbjct: 1355 PPPPPPPPS 1363


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = +2

Query: 410  GGGXXGXXGGGGGXGGGXXGXPPG 481
            GGG     GG GG GG       G
Sbjct: 1706 GGGSLAGLGGLGGLGGAAEASAAG 1729


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = +2

Query: 410  GGGXXGXXGGGGGXGGGXXGXPPG 481
            GGG     GG GG GG       G
Sbjct: 1702 GGGSLAGLGGLGGLGGAAEASAAG 1725


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.2 bits (45), Expect = 6.9
 Identities = 8/19 (42%), Positives = 8/19 (42%)
 Frame = -1

Query: 495 PPXAPPGGXPXXPPPXPPP 439
           P   PP   P  P P P P
Sbjct: 433 PILTPPSSNPVSPVPSPDP 451


>U15954-1|AAA67442.1|   53|Apis mellifera abaecin precursor protein.
          Length = 53

 Score = 21.8 bits (44), Expect = 9.1
 Identities = 10/27 (37%), Positives = 11/27 (40%)
 Frame = +2

Query: 779 PXXPLPGPXPXPSPXKPRXXPFPPXXK 859
           P   +P P   P P  P   PF P  K
Sbjct: 22  PLPNVPQPGRRPFPTFPGQGPFNPKIK 48


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 9.1
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +1

Query: 25  TYXXGNPXKTLNCWY 69
           T   GNP   LN WY
Sbjct: 420 TQWQGNPISPLNDWY 434


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.8 bits (44), Expect = 9.1
 Identities = 9/33 (27%), Positives = 12/33 (36%)
 Frame = +3

Query: 765 PPXXPXXXPSRVPXPXRLPXNPVPXHSPHXXKP 863
           PP      P R P   R+    +  H P   +P
Sbjct: 130 PPSVSLSSPPREPGTPRINFTKLKRHHPRYKRP 162


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,451
Number of Sequences: 438
Number of extensions: 6425
Number of successful extensions: 78
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30355689
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)