Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_E13
(1346 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 32 0.16
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 28 0.89
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 0.89
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 24 1.2
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 27 4.2
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 5.9
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 27 7.8
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 27 7.8
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 27 7.8
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 32.3 bits (70), Expect = 0.16
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = -1
Query: 1265 PPXPPFXIXXXLPPPPPPXXXXKKKN 1188
PP P F PPPPPP K+KN
Sbjct: 13 PPPPGFEPPSQPPPPPPPGYVKKRKN 38
Score = 31.1 bits (67), Expect = 0.36
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = -1
Query: 1283 PXXXXXPPXPPFXIXXXLPPPPPPXXXXKKK 1191
P PP PP PPPPPP KK+
Sbjct: 6 PGNPPPPPPPPGFEPPSQPPPPPPPGYVKKR 36
Score = 27.1 bits (57), Expect = 5.9
Identities = 12/31 (38%), Positives = 12/31 (38%)
Frame = -1
Query: 1283 PXXXXXPPXPPFXIXXXLPPPPPPXXXXKKK 1191
P PP PP PPPPP KK
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPPGYVKK 35
Score = 26.6 bits (56), Expect = 7.8
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 562 PPPPPPPP 585
PPPPPPPP
Sbjct: 9 PPPPPPPP 16
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 28.3 bits (60), Expect = 2.6
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = -2
Query: 1273 PPXPPXPXFXXXXXXPPPPP 1214
PP PP P PPPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPPP 781
Score = 28.3 bits (60), Expect = 2.6
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -1
Query: 1265 PPXPPFXIXXXLPPPPPP 1212
PP PP + PPPPPP
Sbjct: 763 PPPPPPGVAGAGPPPPPP 780
Score = 27.5 bits (58), Expect = 4.5
Identities = 16/53 (30%), Positives = 17/53 (32%)
Frame = -3
Query: 684 PPPPXXIXPPPYXXXKKXAPPXXXXXPGXXXXXGXGGGGGGXXXKXFPPPPPP 526
PPPP + P PP G G G PPPPPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPP--PPPPPP 783
Score = 27.5 bits (58), Expect = 4.5
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = -2
Query: 1273 PPXPPXPXFXXXXXXPPPPP 1214
PP PP P PPPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPP 780
Score = 27.5 bits (58), Expect = 4.5
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -1
Query: 1265 PPXPPFXIXXXLPPPPPP 1212
PP PP PPPPPP
Sbjct: 764 PPPPPGVAGAGPPPPPPP 781
Score = 27.1 bits (57), Expect = 5.9
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = -1
Query: 1283 PXXXXXPPXPPFXIXXXLPPPPPP 1212
P P PP I PPPPPP
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPP 767
Score = 26.6 bits (56), Expect(2) = 0.89
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 562 PPPPPPPP 585
PPPPPPPP
Sbjct: 761 PPPPPPPP 768
Score = 26.6 bits (56), Expect = 7.8
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 562 PPPPPPPP 585
PPPPPPPP
Sbjct: 775 PPPPPPPP 782
Score = 26.6 bits (56), Expect = 7.8
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 562 PPPPPPPP 585
PPPPPPPP
Sbjct: 776 PPPPPPPP 783
Score = 21.4 bits (43), Expect(2) = 0.89
Identities = 7/12 (58%), Positives = 7/12 (58%)
Frame = +1
Query: 544 KXFXXXPPPPPP 579
K PPPPPP
Sbjct: 726 KLLLKSPPPPPP 737
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.6 bits (56), Expect = 7.8
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 562 PPPPPPPP 585
PPPPPPPP
Sbjct: 189 PPPPPPPP 196
Score = 26.6 bits (56), Expect(2) = 0.89
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 562 PPPPPPPP 585
PPPPPPPP
Sbjct: 190 PPPPPPPP 197
Score = 21.4 bits (43), Expect(2) = 0.89
Identities = 7/13 (53%), Positives = 7/13 (53%)
Frame = +1
Query: 565 PPPPPPPXXXXXP 603
P PPPPP P
Sbjct: 236 PAPPPPPPPTLPP 248
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 23.8 bits (49), Expect(2) = 1.2
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +1
Query: 562 PPPPPPP 582
PPPPPPP
Sbjct: 311 PPPPPPP 317
Score = 23.8 bits (49), Expect(2) = 1.2
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +1
Query: 565 PPPPPPP 585
PPPPPPP
Sbjct: 337 PPPPPPP 343
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 26.6 bits (56), Expect = 7.8
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 562 PPPPPPPP 585
PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102
Score = 24.2 bits (50), Expect(2) = 4.2
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = -1
Query: 1229 PPPPPPXXXXKKKN 1188
PPPPPP +KK+
Sbjct: 1096 PPPPPPPAEVEKKD 1109
Score = 21.4 bits (43), Expect(2) = 4.2
Identities = 6/7 (85%), Positives = 7/7 (100%)
Frame = -1
Query: 1232 LPPPPPP 1212
+PPPPPP
Sbjct: 1094 VPPPPPP 1100
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.1 bits (57), Expect = 5.9
Identities = 10/27 (37%), Positives = 11/27 (40%)
Frame = -3
Query: 684 PPPPXXIXPPPYXXXKKXAPPXXXXXP 604
PPPP + PPP PP P
Sbjct: 1708 PPPPMSVPPPPSAPPMPAGPPSAPPPP 1734
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 26.6 bits (56), Expect = 7.8
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 562 PPPPPPPP 585
PPPPPPPP
Sbjct: 306 PPPPPPPP 313
Score = 26.6 bits (56), Expect = 7.8
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 562 PPPPPPPP 585
PPPPPPPP
Sbjct: 307 PPPPPPPP 314
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 26.6 bits (56), Expect = 7.8
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 562 PPPPPPPP 585
PPPPPPPP
Sbjct: 370 PPPPPPPP 377
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 26.6 bits (56), Expect = 7.8
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 562 PPPPPPPP 585
PPPPPPPP
Sbjct: 945 PPPPPPPP 952
Score = 26.6 bits (56), Expect = 7.8
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 562 PPPPPPPP 585
PPPPPPPP
Sbjct: 946 PPPPPPPP 953
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,624,321
Number of Sequences: 5004
Number of extensions: 25252
Number of successful extensions: 490
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 741217394
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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