Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_E10
(886 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1182 - 24610862-24611637,24612223-24612340,24612441-246141... 31 1.6
04_03_0153 + 11919769-11919880,11920190-11920488,11921909-119220... 30 2.8
09_04_0361 - 16948740-16948860,16948951-16949018,16949424-169495... 29 5.0
03_06_0080 - 31512792-31513046,31514087-31514202,31514797-315149... 29 5.0
10_08_0911 - 21499196-21499236,21499368-21499488,21499665-214997... 29 6.6
01_01_0674 + 5162291-5162376,5162530-5162560,5162689-5163207,516... 29 6.6
01_01_0574 + 4263247-4263615,4263945-4263992,4264308-4264514,426... 29 6.6
>07_03_1182 -
24610862-24611637,24612223-24612340,24612441-24614120,
24614253-24614320,24615370-24615550
Length = 940
Score = 30.7 bits (66), Expect = 1.6
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -2
Query: 684 APNPGCVLHSSYYHARTNHQTQCDNNGHPSISCY 583
AP+P VL +SYYH R ++ + D H S C+
Sbjct: 661 APSPISVLDTSYYHTRLSYSFK-DGETHSSEECW 693
>04_03_0153 +
11919769-11919880,11920190-11920488,11921909-11922024,
11922113-11922248,11922959-11923006,11924130-11924228,
11924317-11924385,11924465-11924599,11924687-11924755,
11925221-11925276,11925465-11925624,11926534-11926698,
11927484-11927568,11927646-11927849,11928396-11928487,
11928571-11928613,11930727-11930884,11931520-11931630,
11931947-11932012,11933716-11933784,11934181-11934255,
11934330-11934506,11934598-11934683,11936259-11936313,
11936901-11936939,11938105-11938230,11938319-11938432,
11939208-11939265,11939485-11939623,11939698-11939783,
11939842-11940041
Length = 1148
Score = 29.9 bits (64), Expect = 2.8
Identities = 21/66 (31%), Positives = 30/66 (45%)
Frame = +3
Query: 159 LIMLSRMCIGRSAFNVTQTLKSPVPQNFVPRNYVVRNYAREPRTRVATRSQPTLRERLMA 338
L+ L ++ I SA+ V P+P NF+ R +VR P R + RS T A
Sbjct: 40 LLFLPKIDIPFSAYLVLHKSGIPLPPNFLHRRDLVRARGILPVRRSSARSSTTALTCPAA 99
Query: 339 PAGPNA 356
PN+
Sbjct: 100 AGDPNS 105
>09_04_0361 -
16948740-16948860,16948951-16949018,16949424-16949510,
16949626-16949694,16949786-16949854,16949944-16950765
Length = 411
Score = 29.1 bits (62), Expect = 5.0
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = -1
Query: 844 LSRWCTHCNCTQTTNYTS-SVPKLHASGLGQPR 749
LSRW + C+ T + + +VP L++S L +PR
Sbjct: 221 LSRWMSSCSDDTKTAFAAVTVPLLYSSSLAEPR 253
>03_06_0080 -
31512792-31513046,31514087-31514202,31514797-31514911,
31514997-31515056,31515619-31515688,31515952-31515986,
31516094-31516231,31516369-31516737
Length = 385
Score = 29.1 bits (62), Expect = 5.0
Identities = 13/56 (23%), Positives = 25/56 (44%)
Frame = -1
Query: 862 EHACSRLSRWCTHCNCTQTTNYTSSVPKLHASGLGQPRKQIGAMTAPIIXSVRHPC 695
+ C +L C+C + S+ ++ +GLGQ + AM P + ++ C
Sbjct: 70 QQCCMQLQGMMPQCHCGTSCQMMQSMQQVICAGLGQQQMMKMAMQMPYMCNMAPTC 125
>10_08_0911 -
21499196-21499236,21499368-21499488,21499665-21499789,
21500187-21500418,21500488-21500668,21501342-21501438,
21501641-21501779,21502024-21502351,21502890-21503137,
21503270-21503543,21504200-21504291,21504451-21504521,
21505091-21505181,21506526-21507380,21507482-21507594,
21508007-21508074,21508655-21508835,21509084-21509186,
21509273-21509379,21510046-21511584,21511661-21511771,
21511856-21511908,21511988-21512063,21512147-21512366,
21512477-21512901,21513193-21513372,21513503-21515474
Length = 2680
Score = 28.7 bits (61), Expect = 6.6
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +2
Query: 320 SGETHGTCWTKCIQLGQGCISWSLCSWTSCSV 415
SG+ HG W + + G + +S + SCS+
Sbjct: 58 SGQGHGNSWIEVLSTGSSVVDFSSSAAESCSI 89
>01_01_0674 +
5162291-5162376,5162530-5162560,5162689-5163207,
5165561-5166010,5166050-5166134,5167374-5167399
Length = 398
Score = 28.7 bits (61), Expect = 6.6
Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Frame = -3
Query: 881 PRPIASGARMFKT----LQMVHTLQLYSDHQLHQQCTQAARIRIGP 756
P+P A G RMFKT L +H Y +QQ AA P
Sbjct: 130 PKPGACGQRMFKTAMSVLANMHVAATYRRQYYYQQAAAAAAAEAAP 175
>01_01_0574 +
4263247-4263615,4263945-4263992,4264308-4264514,
4264670-4264826,4264958-4265041,4265785-4265909,
4268100-4268218,4268535-4268619,4269087-4269134
Length = 413
Score = 28.7 bits (61), Expect = 6.6
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 258 VVRNYAREPRTRVATRSQPTLRERLMA 338
V+RNY P R+ T++Q RER+++
Sbjct: 110 VLRNYVPSPSQRIRTQNQREYRERILS 136
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,292,161
Number of Sequences: 37544
Number of extensions: 568127
Number of successful extensions: 1636
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1636
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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