Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_E09
         (871 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|ch...    30   0.37 
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar...    28   2.0  
SPAC2G11.04 |||RNA-binding protein, G-patch type |Schizosaccharo...    26   6.1  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    26   8.0  

>SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 500

 Score = 30.3 bits (65), Expect = 0.37
 Identities = 10/24 (41%), Positives = 19/24 (79%)
 Frame = -2

Query: 591 RFTVPS*ILKYVWHFLIVTILFFF 520
           ++TV S ++ ++W F ++TI+FFF
Sbjct: 258 QYTVASWVMLFMWFFYMLTIIFFF 281


>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 682

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = -2

Query: 570 ILKYVWHFLIVTILFFFCLKAGFLICIIYSENNVQQKHKCIFFV 439
           ILK +W ++I  IL F    +    CI    N++Q      FFV
Sbjct: 565 ILKQLWPYIIAMILNFIVRSSFIFYCIF--PNHIQHSSGISFFV 606


>SPAC2G11.04 |||RNA-binding protein, G-patch type
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 301

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 185 LVIKMTERCGLKVGQVCTQHIQ 120
           + +KM +RCG K GQ   QH Q
Sbjct: 255 VALKMLQRCGWKEGQGLGQHNQ 276


>SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1369

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -1

Query: 583  CSIMNLKICLAFSYCYH 533
            C I+N+ +C+ +  CYH
Sbjct: 1346 CLILNVALCIMYLRCYH 1362


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,500,179
Number of Sequences: 5004
Number of extensions: 73757
Number of successful extensions: 154
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)