Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_E06
         (911 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc...    28   1.6  
SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr 2||...    26   6.5  
SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    26   6.5  
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc...    26   8.5  
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    26   8.5  
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha...    26   8.5  

>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
           Bms1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1121

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 574 SEVAKPDRTIKIPGVSPWKLPRALSCSDPCRXPD 675
           + + K D ++ IPGV  +      S  DPC  PD
Sbjct: 281 TNLPKHDASVHIPGVGDFVTSDVSSLEDPCPPPD 314


>SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 18/62 (29%), Positives = 28/62 (45%)
 Frame = +3

Query: 567 AQVRGGETRQDYKDTRRFPLEAPSCALLFRPLPLTGYLSAFLPSGSVALSHSSRCTYLSS 746
           A V GG     +    RF  ++P   LL   + ++G        GSVA+++ +  TYL  
Sbjct: 143 AMVNGGGAFNAFDS--RFESDSPLSGLLQSAMYISGLSGGSWLVGSVAINNFTNITYLRD 200

Query: 747 GV 752
            V
Sbjct: 201 NV 202


>SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 673

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 18/62 (29%), Positives = 28/62 (45%)
 Frame = +3

Query: 567 AQVRGGETRQDYKDTRRFPLEAPSCALLFRPLPLTGYLSAFLPSGSVALSHSSRCTYLSS 746
           A V GG     +    RF  ++P   LL   + ++G        GSVA+++ +  TYL  
Sbjct: 143 AMVNGGGAFNAFDS--RFESDSPLSGLLQSAMYISGLSGGSWLVGSVAINNFTNITYLRD 200

Query: 747 GV 752
            V
Sbjct: 201 NV 202


>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
           Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 934

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
 Frame = +2

Query: 542 LXEHHKNRRSSQRWRNPTGL*RYQAF----PPG 628
           L ++HKNR+S+     P GL  Y+A     PPG
Sbjct: 387 LQDYHKNRKSNFNKPGPDGLGLYKAVLLSGPPG 419


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -1

Query: 662 QGSEQESARGSFQGETPGIFIVLSGFATSDLSVDFCDARXGGR 534
           QG+  +SAR S+ G+  GI  +L   + S    DF +    GR
Sbjct: 522 QGTFSKSARPSYGGQQDGIIDLLYRKSVSRYETDFEELEFLGR 564


>SPAC57A10.02 |cdr2||GIN4 family protein kinase
           Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 14/54 (25%), Positives = 23/54 (42%)
 Frame = +2

Query: 434 RIRGITQERTCEQKASKRPGTVKRPRCWRFSIGSAPLXEHHKNRRSSQRWRNPT 595
           R+     E T  +  S   G+   PR  RF++G+     +  N   +Q + N T
Sbjct: 511 RVTSRMSEHTGNRVVSFPRGSAFNPRVTRFNVGNEQFSNNIDNNNYNQPYANAT 564


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,237,276
Number of Sequences: 5004
Number of extensions: 60843
Number of successful extensions: 145
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)