Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_E05
(894 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 55 2e-08
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 32 0.13
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 32 0.13
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p... 31 0.17
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 30 0.39
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 29 0.67
SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 29 0.67
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 29 0.89
SPAC26F1.02 |||pinin homologue|Schizosaccharomyces pombe|chr 1||... 29 1.2
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 28 1.6
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha... 28 1.6
SPCC1739.08c |||short chain dehydrogenase|Schizosaccharomyces po... 28 2.1
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce... 27 2.7
SPAC8C9.17c |spc34||DASH complex subunit Spc34|Schizosaccharomyc... 27 3.6
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 27 3.6
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi... 27 3.6
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 27 4.8
SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 27 4.8
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual 27 4.8
SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor c... 26 6.3
SPCC338.18 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 26 6.3
SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces... 26 6.3
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa... 26 8.3
SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|c... 26 8.3
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces... 26 8.3
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc... 26 8.3
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 54.8 bits (126), Expect = 2e-08
Identities = 40/122 (32%), Positives = 72/122 (59%), Gaps = 6/122 (4%)
Frame = +2
Query: 284 EDLQLAAELGK--TLLERNKELETALRQHQNVIEDQAQEIEYLTKQTVALRE-VNDS-RL 451
+ LQ+ + K +L E+N E + L++ + ++++ +E+ L K LRE DS +L
Sbjct: 479 KQLQMKETVNKLTSLQEQNNEFDRQLKEQEEDLQNKEEELTELRK---LLREQTQDSQKL 535
Query: 452 RIY-EQLELSIQDLERANHRLAVDHAAD-KKHIKSLCSNIDTVEAKCEELQKTVDELNVQ 625
R+ EQLEL QDL++A + ++D + IKSL S++ +A+C Q+ ++ELN Q
Sbjct: 536 RLLVEQLELERQDLKQAGENHYSNLSSDYETQIKSLESSLTNSQAECVSFQEKINELNSQ 595
Query: 626 LE 631
++
Sbjct: 596 ID 597
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 31.9 bits (69), Expect = 0.13
Identities = 44/158 (27%), Positives = 71/158 (44%), Gaps = 1/158 (0%)
Frame = +2
Query: 50 SCSXDATVLAAVATSQNFNNEIWLQLNQKRRTRRQ*TLDVKMSEEQEQCDSFNSWELNGL 229
S S TVL +S+N N L+ Q R L + E+E D N +EL L
Sbjct: 1169 SLSQQITVLQQ-NSSENLNISANLEAVQDNDLRE---LVSYLRHEKEIMD--NKYELTIL 1222
Query: 230 NSLDLWDYTVELECLQGTED-LQLAAELGKTLLERNKELETALRQHQNVIEDQAQEIEYL 406
++ L +++ LQ T D LQL L R + L + Q I +QE++ L
Sbjct: 1223 DNRGL---NQQVKSLQSTVDSLQLE-------LNRLQSLPVSNDQTDTPIISGSQEVQLL 1272
Query: 407 TKQTVALREVNDSRLRIYEQLELSIQDLERANHRLAVD 520
+ LR+ ND++L ++LE ++ L + + L +
Sbjct: 1273 YESNSVLRKDNDAKLGKIQELEKEVEKLNASLNPLQTE 1310
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 31.9 bits (69), Expect = 0.13
Identities = 30/127 (23%), Positives = 58/127 (45%), Gaps = 3/127 (2%)
Frame = +2
Query: 260 ELECLQGTEDLQLAAELGKTLLERNKELETALRQHQNVIEDQAQEIEYLTKQTVALREVN 439
+L+ TE+LQLA ER L T + QN ++D + + L++ LR +
Sbjct: 1600 KLKLASTTEELQLAEN------ER-LSLTTRMLDLQNQVKDLSNIKDSLSEDLRTLRSLE 1652
Query: 440 DSRLRIYEQLELSIQDLERANHRLAVDHAADKKHIKSLCSNIDTV---EAKCEELQKTVD 610
DS + ++ ++ +E L A + + + ++D + + +CE L +
Sbjct: 1653 DSVASLQKECKIKSNTVESLQDVLTSVQARNAELEDEVSRSVDKIRRRDDRCEHLSGKLK 1712
Query: 611 ELNVQLE 631
+L+ QLE
Sbjct: 1713 KLHSQLE 1719
Score = 26.2 bits (55), Expect = 6.3
Identities = 14/70 (20%), Positives = 30/70 (42%)
Frame = +2
Query: 386 AQEIEYLTKQTVALREVNDSRLRIYEQLELSIQDLERANHRLAVDHAADKKHIKSLCSNI 565
+++++ LT L + + + + + L S Q + H L DH + +L +
Sbjct: 758 SEDVKRLTANVETLTQDSKAMKQSFTSLVNSYQSISNLYHELRDDHVNMQSQNNTLLESE 817
Query: 566 DTVEAKCEEL 595
++ CE L
Sbjct: 818 SKLKTDCENL 827
>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 595
Score = 31.5 bits (68), Expect = 0.17
Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 2/107 (1%)
Frame = +2
Query: 305 ELGKTLLER-NKELETALRQHQNVIEDQAQEIEYLTKQTVALREVNDSRLRIYEQLELSI 481
E G +L + N +L AL H+ + + E L + L+ QLE
Sbjct: 477 EEGMVMLNKENTKLSEALSNHRVTRSEMEEATEILKNNSADLKA----------QLEKQP 526
Query: 482 QDLE-RANHRLAVDHAADKKHIKSLCSNIDTVEAKCEELQKTVDELN 619
Q+LE R +++ ++K +K+ ++I ++ EEL KT+ +LN
Sbjct: 527 QELENRLLQEISILKQRNQKFLKNNATSIQQIQYLDEELGKTLKQLN 573
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 30.3 bits (65), Expect = 0.39
Identities = 28/124 (22%), Positives = 54/124 (43%), Gaps = 3/124 (2%)
Frame = +2
Query: 284 EDLQLAAELGKTLLERNKELETALRQHQNVIEDQAQEIEYLTKQTVALREVNDSRL---R 454
E L +L + +NKELE +++ N I+ +E+E ++ L + + +
Sbjct: 1096 ESLNDKDQLYQLQATKNKELEAKVKECLNNIKSLTKELENKEEKCQNLSDASLKYIELQE 1155
Query: 455 IYEQLELSIQDLERANHRLAVDHAADKKHIKSLCSNIDTVEAKCEELQKTVDELNVQLEI 634
I+E L L + DLE + D + +K + +N + K +L + L Q
Sbjct: 1156 IHENLLLKVSDLENYKKKYE-GLQLDLEGLKDVDTNFQELSKKHRDLTFNHESLLRQSAS 1214
Query: 635 YRRR 646
Y+ +
Sbjct: 1215 YKEK 1218
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 29.5 bits (63), Expect = 0.67
Identities = 25/99 (25%), Positives = 47/99 (47%)
Frame = +2
Query: 215 ELNGLNSLDLWDYTVELECLQGTEDLQLAAELGKTLLERNKELETALRQHQNVIEDQAQE 394
E NG +L L D+ +E L T QL + K + E + L+ AL+ ++
Sbjct: 621 ETNGYFTL-LNDFNASMEELLNTHSNQLLISMTK-ITEHFQSLDEALQSARSSCAVPNSS 678
Query: 395 IEYLTKQTVALREVNDSRLRIYEQLELSIQDLERANHRL 511
++ + E+ DS+ + + LE S+QD+ ++ +L
Sbjct: 679 LDLIVS------ELKDSKNSLLDALEHSLQDISMSSQKL 711
>SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 575
Score = 29.5 bits (63), Expect = 0.67
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Frame = +3
Query: 288 ICNWRPNSGKPYSNATRNSRQPFASIKMLL----KIKHKKSNILQSKRLLCE 431
I +W+ S N + ++ F SI M+L K +++KSN+L + R LCE
Sbjct: 237 IPSWKSRSSDSKYNDHQFVKKNFFSIIMVLESLAKSQYRKSNVLAADRSLCE 288
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 29.1 bits (62), Expect = 0.89
Identities = 25/99 (25%), Positives = 48/99 (48%)
Frame = +2
Query: 320 LLERNKELETALRQHQNVIEDQAQEIEYLTKQTVALREVNDSRLRIYEQLELSIQDLERA 499
L E NK L L +++ VI + ++IE L K +A +N EQLE +Q + A
Sbjct: 1235 LNESNKSLRENLERNEEVITELREKIETL-KTDLANFRLNK------EQLESQLQTEKAA 1287
Query: 500 NHRLAVDHAADKKHIKSLCSNIDTVEAKCEELQKTVDEL 616
+L + K+H + + ++++ + + + +EL
Sbjct: 1288 VKKLENSNEEYKRHNQEILLSLNSSTSTSSDASRLKNEL 1326
Score = 28.3 bits (60), Expect = 1.6
Identities = 24/101 (23%), Positives = 39/101 (38%)
Frame = +2
Query: 263 LECLQGTEDLQLAAELGKTLLERNKELETALRQHQNVIEDQAQEIEYLTKQTVALREVND 442
L C T+D + L LLE NK L L H+N + ++ +Q + + E
Sbjct: 1000 LRCENITKDSETRVAL---LLEENKHLNNELSSHRNAEKQHLEKENDYKQQLLLVTEDLR 1056
Query: 443 SRLRIYEQLELSIQDLERANHRLAVDHAADKKHIKSLCSNI 565
YE+ L D +L D+ + ++ L I
Sbjct: 1057 KTREDYEKELLRHADARSTLQKLREDYTKALEQVEDLNKEI 1097
>SPAC26F1.02 |||pinin homologue|Schizosaccharomyces pombe|chr
1|||Manual
Length = 197
Score = 28.7 bits (61), Expect = 1.2
Identities = 21/81 (25%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Frame = +2
Query: 296 LAAELGKTLLERNKELETALRQHQNVIEDQA-----QEIEYLTKQTVALREVNDSRLRIY 460
L LGK E +E ++A + + +E++ QE++ L KQ E+ +SRL+
Sbjct: 80 LLGTLGKFQQESEREQKSARKVKRAELEEKLAKRREQELQELEKQEKIEAEILESRLQEQ 139
Query: 461 EQLELSIQDLERANHRLAVDH 523
++ L +L+R + + +D+
Sbjct: 140 RKVALDELELDRNDLKKVLDN 160
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 952
Score = 28.3 bits (60), Expect = 1.6
Identities = 52/202 (25%), Positives = 90/202 (44%), Gaps = 19/202 (9%)
Frame = +2
Query: 86 ATSQNFNNEIWLQLNQKRRTRRQ*TLDVKMSEEQE-QCDSFNSWELNGLNSLDLWDYTVE 262
A FN+E QL QK + ++K +E + + S N +N + + ++
Sbjct: 271 ALEDKFNSEAARQLLQKSLSIV--ASNLKQAENKTISYEEKLSIAQNSINEIQTQNRDLK 328
Query: 263 LECLQGTEDLQLAAELGKTLLERNKELETALRQHQNVIED-QAQEIEYLTKQTVALREVN 439
LE TE LQ + K LLERN+ L+ AL +N ++ + Y T+ A +++N
Sbjct: 329 LE----TEKLQ---DQIKALLERNQSLQEALETVKNDEKNLREMNANYETEMKEARQKLN 381
Query: 440 DSRLRI------YEQLELSIQDL-----ERA---NHRLAVDHAAD---KKHIKSLCSNID 568
+ I + EL I L E+A + +V D ++ I+S +++
Sbjct: 382 NKEALISHYDDDFRAKELKISRLSESLREKAGLLEFQSSVSEQRDLLYQEQIQSSIKDME 441
Query: 569 TVEAKCEELQKTVDELNVQLEI 634
V K E L + ++EL LE+
Sbjct: 442 NVFRKNEYLMEELNELKNNLEV 463
>SPAC458.03 |||nuclear telomere cap complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 868
Score = 28.3 bits (60), Expect = 1.6
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +2
Query: 536 KHIKSLCSNIDTVEAKCEELQKTVDEL 616
K ++ +CS+I E+ +EL+KTVD L
Sbjct: 301 KRVEVVCSSISYKESDKKELEKTVDSL 327
>SPCC1739.08c |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 261
Score = 27.9 bits (59), Expect = 2.1
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = +2
Query: 473 LSIQDLERANHRLAVDHAADKKHIKSLCSNIDTVEAKCEELQKTVDELNV 622
L+ E+A +LA + +K S DTVEA EE+QK E++V
Sbjct: 53 LTTDPTEKAK-KLAEETGVQVHTLKIDISRSDTVEAGVEEIQKIFKEIHV 101
>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 855
Score = 27.5 bits (58), Expect = 2.7
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 374 IEDQAQEIEYLTKQTVALREVNDSRLRIYEQLELSIQ 484
I+ + Q I+ + T L NDSR+RIY + S++
Sbjct: 447 IQTRTQMIDNIAGDTEMLVTTNDSRIRIYNLRDKSLE 483
>SPAC8C9.17c |spc34||DASH complex subunit Spc34|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 164
Score = 27.1 bits (57), Expect = 3.6
Identities = 21/83 (25%), Positives = 40/83 (48%)
Frame = +2
Query: 248 DYTVELECLQGTEDLQLAAELGKTLLERNKELETALRQHQNVIEDQAQEIEYLTKQTVAL 427
DY +E L +Q E +TL+E+ + + +NV+ +Q ++++ L K+
Sbjct: 74 DYVACIEELLDIYPMQGGREYLETLVEKYNLHMSGIENLENVLLEQKEQLQQLEKRQT-- 131
Query: 428 REVNDSRLRIYEQLELSIQDLER 496
+ +R I ++ IQ LER
Sbjct: 132 -DQVSARENILQRETSEIQRLER 153
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 27.1 bits (57), Expect = 3.6
Identities = 16/62 (25%), Positives = 29/62 (46%)
Frame = +2
Query: 326 ERNKELETALRQHQNVIEDQAQEIEYLTKQTVALREVNDSRLRIYEQLELSIQDLERANH 505
E+ KE+ AL + + + +EIE L + L+ + + + + +I DLE N
Sbjct: 933 EKFKEVSQALAEANEKLNARDEEIERLKVDIIGLQNASLNMQSLKDSDNRTISDLESKNK 992
Query: 506 RL 511
L
Sbjct: 993 EL 994
>SPCC576.13 |swc5||chromatin remodeling complex subunit
Swc5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 215
Score = 27.1 bits (57), Expect = 3.6
Identities = 28/123 (22%), Positives = 49/123 (39%), Gaps = 5/123 (4%)
Frame = +2
Query: 281 TEDLQLAAELGKTLLERNKELETALRQHQNVIEDQAQEIEYLTKQTVALREVNDSRL--- 451
+ED+ L K ERN +L IE Q + +T L E N S
Sbjct: 62 SEDVTLKNIAKKNKRERNDKLIPQQSNESEAIEKPVQSTTEVELKTNELAESNSSVAVEG 121
Query: 452 --RIYEQLELSIQDLERANHRLAVDHAADKKHIKSLCSNIDTVEAKCEELQKTVDELNVQ 625
Y + L R + +D ++ +K +K + ++T+E + K + E ++Q
Sbjct: 122 DENSYAETPKKKHSLIRKRRKSPLDSSSAQKVLKK--NKLNTLEQAQQNWSKYIKEQDIQ 179
Query: 626 LEI 634
E+
Sbjct: 180 DEL 182
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 26.6 bits (56), Expect = 4.8
Identities = 37/164 (22%), Positives = 70/164 (42%), Gaps = 2/164 (1%)
Frame = +2
Query: 122 QLNQKRRTRRQ*TLDVKMSEEQEQCDSFNSWELNGLNSLDLWDYTVELECLQGTEDLQLA 301
QL Q+ T+R +K S + +FN + L + DL D +++ QG L A
Sbjct: 810 QLKQEYLTKRNFESKLKSSAVSSRKPTFNEVKPANLLAEDLSDNEDDIDRKQGLFSLAKA 869
Query: 302 AELGKTLLERNKELETALRQHQNVIEDQAQEIEYLTKQTVA--LREVNDSRLRIYEQLEL 475
++ + + ++++ + I+ +I +T + VA + S Y+++ L
Sbjct: 870 NKIPEIRQQERRQVQLL---SNSTIKMHPSQIRMMTNRNVANVKARLFPSMTDFYKEI-L 925
Query: 476 SIQDLERANHRLAVDHAADKKHIKSLCSNIDTVEAKCEELQKTV 607
S + ++ + + H D K I S TVE E LQ +
Sbjct: 926 SWEPANQSPNPVLKFHKLDGKIIDS----FKTVEHYMEVLQPMI 965
>SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 642
Score = 26.6 bits (56), Expect = 4.8
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Frame = +2
Query: 302 AELGKTLLERNKELETALRQHQNVIEDQAQEIEYLTKQTVALREVNDSRLRIYEQ-LELS 478
AE T L R EL+ L Q ++ +++ K A + +S L + ++ +
Sbjct: 183 AERAATAL-REAELKHRLAQANADVDVANSKLDIALKNEAAWKAERESSLAHQKAVIDSA 241
Query: 479 IQDLERANHRLAVDHAADKK 538
+LERA H AV A KK
Sbjct: 242 RAELERARHEAAVADATYKK 261
>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1489
Score = 26.6 bits (56), Expect = 4.8
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +2
Query: 320 LLERNKELETALRQHQNVIEDQAQEIEYLTKQTVALREVNDSRLRIYE 463
LL +NK + +H N + Q EYL T++++ +N+S + E
Sbjct: 769 LLVKNKISLDDVLKHHNKYKFGKQSTEYLKINTLSMKSLNNSSRKFLE 816
>SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor
complex subunit Rrn5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 556
Score = 26.2 bits (55), Expect = 6.3
Identities = 16/77 (20%), Positives = 35/77 (45%)
Frame = +2
Query: 248 DYTVELECLQGTEDLQLAAELGKTLLERNKELETALRQHQNVIEDQAQEIEYLTKQTVAL 427
D +V +CL ED+ +A E+ + ++ +++ L + N+ E + Q+V
Sbjct: 128 DASVRSQCLLKYEDIPIAMEMSQNWIDWEEKIAERLLEGSNI---SGVETSHYNAQSVKN 184
Query: 428 REVNDSRLRIYEQLELS 478
+ N+ E ++S
Sbjct: 185 KTSNEDLFDTNEMRKIS 201
>SPCC338.18 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 117
Score = 26.2 bits (55), Expect = 6.3
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = -3
Query: 400 FDFLCLIFNNILMLAKGCLEFLVAFE*GFPEFGRQLQIFSSLQAL 266
F + L+F+ + L G L L++ GFP G + + L AL
Sbjct: 61 FSLIVLLFSLMFSLTFGSLLGLISLALGFPSVGYRYVLLPILNAL 105
>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 844
Score = 26.2 bits (55), Expect = 6.3
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -1
Query: 765 VPGEALPSSVYYLPRGFLQ 709
VP E PSS+YYL G L+
Sbjct: 491 VPAEPYPSSLYYLQPGVLR 509
>SPAC19A8.08 |upf2||nonsense-mediated decay protein
Upf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1049
Score = 25.8 bits (54), Expect = 8.3
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 545 KSLCSNIDTVEAKCEELQKTVDELNVQLE 631
KSL S +D +E C++ + +ELN Q +
Sbjct: 272 KSLNSYVDKLEVYCQKRKSLFEELNKQYQ 300
>SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 547
Score = 25.8 bits (54), Expect = 8.3
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +3
Query: 264 WSACKELKICNWRPNSGKPYSNATRNS-RQPFASIKMLLKIKHK 392
WSA E+ +C WR + P+ N N+ + + K L KI K
Sbjct: 436 WSAPLEIDVCYWRKLA--PFQNMDTNTFLETITNPKKLYKICQK 477
>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 796
Score = 25.8 bits (54), Expect = 8.3
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +2
Query: 161 LDVKMSEEQEQCDSFNSWELNGLNSLDLWDYTVELECLQGTED 289
LD+ QE D W G +L+ WD+ + EC + +D
Sbjct: 654 LDIASQIAQELDDPLK-WRSLGDAALNAWDFVLAQECFEKGKD 695
>SPBC336.12c |cdc10||MBF transcription factor complex subunit
Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 25.8 bits (54), Expect = 8.3
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 271 PARN*RFATGGRTRENPTRTQQGTRDSPSPAS 366
P RN F+ ++ +N T + SPSP+S
Sbjct: 197 PLRNHNFSNPSKSSKNGVHTINNMQSSPSPSS 228
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,961,862
Number of Sequences: 5004
Number of extensions: 54393
Number of successful extensions: 206
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -