Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_E03
         (909 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592176-1|ABQ95972.2|  661|Anopheles gambiae laccase-3 protein.       25   2.4  
AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         24   7.3  
AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    23   9.7  

>EF592176-1|ABQ95972.2|  661|Anopheles gambiae laccase-3 protein.
          Length = 661

 Score = 25.4 bits (53), Expect = 2.4
 Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
 Frame = -2

Query: 485 HSPPGVKWLLEPIDIYDVNAPPTLRHKFSQYSYNSCP-TLQTETH 354
           H P   +    P+++Y V      R +F   + + CP  LQ E H
Sbjct: 260 HDPKKNETTQTPLEVYTVRRGARFRFRFINAASHVCPLQLQIEDH 304


>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 23.8 bits (49), Expect = 7.3
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = -2

Query: 494  RRGHSPPGVKWLLEPIDIYDVNAPPTLRHKFSQYSYNSCPTLQ 366
            RR HSP  +  L   +    + A   +RH F +Y  +  P LQ
Sbjct: 2040 RRQHSPGALTDLRSALVNNTIFASLAVRHGFHKYFLHLSPGLQ 2082


>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 23.4 bits (48), Expect = 9.7
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 780 DIASQG*QHR*EKKIDQHRDDVTVLLVQVE 691
           DIA QG     EKKI +H +    L VQ++
Sbjct: 423 DIAKQG---ELEKKIQEHTESFEQLRVQID 449


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 819,900
Number of Sequences: 2352
Number of extensions: 15131
Number of successful extensions: 18
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 98401338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)