Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_E02
         (875 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC068070-1|AAH68070.1|  123|Homo sapiens mitochondrial ribosomal...    44   7e-04
AK128797-1|BAC87611.1|  201|Homo sapiens protein ( Homo sapiens ...    30   9.6  

>BC068070-1|AAH68070.1|  123|Homo sapiens mitochondrial ribosomal
           protein L52 protein.
          Length = 123

 Score = 44.0 bits (99), Expect = 7e-04
 Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
 Frame = +1

Query: 178 TGLRRFSSCSALFTKN-WRVARGLPVNRNAEGILTDGPDYTFLDGRPTPXXXXXXXXXXX 354
           TG+RR    +A +    WR+ +GL  N +  G LT+ PD ++ DGRP P           
Sbjct: 10  TGVRRLHCSAAAWAGGQWRLQQGLAANPSGYGPLTELPDCSYADGRPAPPMKGQLRRKAE 69

Query: 355 XXXXAEQIVTLS 390
               A ++V LS
Sbjct: 70  RETFARRVVLLS 81


>AK128797-1|BAC87611.1|  201|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45585 fis, clone BRTHA3013882. ).
          Length = 201

 Score = 30.3 bits (65), Expect = 9.6
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -1

Query: 377 ICSASCLCRCILSFCLC 327
           +C + CLC C++S CLC
Sbjct: 54  VCVSVCLCVCLVSVCLC 70


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,409,295
Number of Sequences: 237096
Number of extensions: 1194530
Number of successful extensions: 2009
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2003
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11159604822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)