Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_E01
(878 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 31 0.22
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 30 0.38
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 28 1.5
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 28 2.0
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 26 8.1
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 31.1 bits (67), Expect = 0.22
Identities = 28/85 (32%), Positives = 28/85 (32%), Gaps = 5/85 (5%)
Frame = -1
Query: 791 GGGKGGXXX-----GGFWGXAXXXXXPGGGXPXLKGXGVFAXXXGGGAXXEXPQGGGXFG 627
GGG GG GGF G GG G G F GG GGG G
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGG 253
Query: 626 VXXXXGXFLXXLXXXGPPGFXGXPG 552
G F G PG G PG
Sbjct: 254 FGGGPGGF------GGGPGGHGGPG 272
Score = 30.3 bits (65), Expect = 0.38
Identities = 27/81 (33%), Positives = 28/81 (34%), Gaps = 4/81 (4%)
Frame = -1
Query: 857 GVXGXEXPXPPG-GKXGPLXX*GGGGKGGXXXGGFWGX-AXXXXXPG--GGXPXLKGXGV 690
G G PPG G G GG G GGF G PG GG P G G+
Sbjct: 192 GFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGL 251
Query: 689 FAXXXGGGAXXEXPQGGGXFG 627
G G P G G G
Sbjct: 252 GGFGGGPGGFGGGPGGHGGPG 272
Score = 27.1 bits (57), Expect = 3.5
Identities = 27/87 (31%), Positives = 27/87 (31%), Gaps = 2/87 (2%)
Frame = -1
Query: 785 GKGGXXXGGFWGXAXXXXXPGGGXPXLKGXGVFAXXXGGGAXXEXPQGGGXFGVXXXXGX 606
G GG GG A G G G G G P G G FG G
Sbjct: 162 GLGGLALGGLASHALGNLFHHRGH---NGGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGH 218
Query: 605 FLXXLXXXG--PPGFXGXPGXPPXGGG 531
G P GF G PG GGG
Sbjct: 219 HHGGHGGFGGGPGGFEGGPGG--FGGG 243
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 30.3 bits (65), Expect = 0.38
Identities = 19/72 (26%), Positives = 21/72 (29%), Gaps = 2/72 (2%)
Frame = +3
Query: 465 GXPPXXPPX--GPGXPXPXGGXXXSPPPXGXPXXXPKXGGPPXXQXXQKXPXXGXNPKXX 638
G PP P P P P G P P G PP + P
Sbjct: 1119 GAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGI 1178
Query: 639 PPLGXFXXGPPP 674
PP+ G PP
Sbjct: 1179 PPVPKPAAGVPP 1190
Score = 29.1 bits (62), Expect = 0.87
Identities = 17/56 (30%), Positives = 17/56 (30%), Gaps = 1/56 (1%)
Frame = +2
Query: 464 GXPP-PXPPXGPRXPXPXGGXXGFPPPXGXTXXXPXXRGAPXXPTXPKXXPXGXKP 628
G PP P P P P P G PPP G P P P P
Sbjct: 1187 GVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAP 1242
Score = 28.3 bits (60), Expect = 1.5
Identities = 23/92 (25%), Positives = 25/92 (27%), Gaps = 1/92 (1%)
Frame = +3
Query: 483 PPXGPGXPXPXGGXXXSPPPXGXPXXXPKXGGPPXXQXXQKXPXXGXNPKXXPPLGXFXX 662
P P P P P P G P G PP + P PP+
Sbjct: 1060 PSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSG 1119
Query: 663 GPP-PXXGGKNPXXF*XGGPPPGXXXXRGXPP 755
PP P P G PP PP
Sbjct: 1120 APPVPKPSVAAPPVPVPSGAPPVPKPSVAAPP 1151
Score = 27.1 bits (57), Expect = 3.5
Identities = 21/79 (26%), Positives = 24/79 (30%), Gaps = 4/79 (5%)
Frame = +3
Query: 471 PPXXPPXG--PGXPXPXGGXXXSPPP-XGXPXXXPKXGGPPXXQXXQKXPXXGXNPKXXP 641
PP P P P P G PPP P P G PP P + P
Sbjct: 1169 PPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPP 1228
Query: 642 -PLGXFXXGPPPXXGGKNP 695
P+ P P + P
Sbjct: 1229 VPVPTAKAPPVPAPSSEAP 1247
Score = 26.6 bits (56), Expect = 4.7
Identities = 18/57 (31%), Positives = 18/57 (31%), Gaps = 4/57 (7%)
Frame = +2
Query: 470 PPPXPPXGPRXPXPXGGXXGFPP----PXGXTXXXPXXRGAPXXPTXPKXXPXGXKP 628
P P P P P G PP P P GAP P P P KP
Sbjct: 1042 PVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPA-PSGIPPVPKP 1097
Score = 26.2 bits (55), Expect = 6.1
Identities = 15/44 (34%), Positives = 15/44 (34%), Gaps = 1/44 (2%)
Frame = +2
Query: 464 GXPPPXPPXG-PRXPXPXGGXXGFPPPXGXTXXXPXXRGAPXXP 592
G PP P G P P P P P P GAP P
Sbjct: 1081 GAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVP 1124
Score = 25.8 bits (54), Expect = 8.1
Identities = 16/53 (30%), Positives = 16/53 (30%)
Frame = +2
Query: 470 PPPXPPXGPRXPXPXGGXXGFPPPXGXTXXXPXXRGAPXXPTXPKXXPXGXKP 628
P P P P P P P P G AP P P P KP
Sbjct: 1113 PVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPA-PSGAPPVPKP 1164
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 28.3 bits (60), Expect = 1.5
Identities = 16/48 (33%), Positives = 16/48 (33%)
Frame = +3
Query: 531 SPPPXGXPXXXPKXGGPPXXQXXQKXPXXGXNPKXXPPLGXFXXGPPP 674
SPPP P P P G P PP G GPPP
Sbjct: 731 SPPPPPPAVIVPTPA-PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPP 777
Score = 26.2 bits (55), Expect = 6.1
Identities = 17/57 (29%), Positives = 18/57 (31%)
Frame = +3
Query: 474 PXXPPXGPGXPXPXGGXXXSPPPXGXPXXXPKXGGPPXXQXXQKXPXXGXNPKXXPP 644
P PP P P +P P P P GGPP G P PP
Sbjct: 732 PPPPPPAVIVPTP------APAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 25.8 bits (54), Expect = 8.1
Identities = 14/38 (36%), Positives = 14/38 (36%), Gaps = 2/38 (5%)
Frame = +3
Query: 471 PPXXPPXG--PGXPXPXGGXXXSPPPXGXPXXXPKXGG 578
PP P G P P P G PPP P GG
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.9 bits (59), Expect = 2.0
Identities = 15/48 (31%), Positives = 15/48 (31%)
Frame = +2
Query: 470 PPPXPPXGPRXPXPXGGXXGFPPPXGXTXXXPXXRGAPXXPTXPKXXP 613
PP PP P P G P P P G P P P P
Sbjct: 428 PPSLPPSAP-PSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAP 474
Score = 26.2 bits (55), Expect = 6.1
Identities = 15/49 (30%), Positives = 15/49 (30%), Gaps = 1/49 (2%)
Frame = +2
Query: 470 PPPXPPXGPRXPX-PXGGXXGFPPPXGXTXXXPXXRGAPXXPTXPKXXP 613
PP P P P P P P G P AP P P P
Sbjct: 436 PPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAP 484
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 25.8 bits (54), Expect = 8.1
Identities = 16/53 (30%), Positives = 16/53 (30%), Gaps = 3/53 (5%)
Frame = +3
Query: 432 PXXXGXGRXFXGXPPXXPPX---GPGXPXPXGGXXXSPPPXGXPXXXPKXGGP 581
P G PP PP PG P P G P G P G P
Sbjct: 509 PGAPGMPNLNMSQPPMVPPGMALPPGMPAPFPGYPAVPAMPGIPGATAPPGAP 561
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.313 0.147 0.514
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,669,358
Number of Sequences: 5004
Number of extensions: 21198
Number of successful extensions: 80
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
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