Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_D23
         (897 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1795.01c |mad3|SPCC895.02|mitotic spindle checkpoint protein...    84   2e-17
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos...    36   0.008
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        28   1.6  
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    27   4.8  
SPAC222.15 |meu13|SPAC821.01|Tat binding protein 1|Schizosacchar...    26   6.3  
SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase |S...    26   8.4  

>SPCC1795.01c |mad3|SPCC895.02|mitotic spindle checkpoint protein
           Mad3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 310

 Score = 84.2 bits (199), Expect = 2e-17
 Identities = 45/154 (29%), Positives = 79/154 (51%), Gaps = 2/154 (1%)
 Frame = +2

Query: 305 IDFSKENIQPLRGGRNLVQLSTALQAQSDADAQKQLQIQKEEHETAIRNYQG-PDPLEPW 481
           I+ SKENI+P + G +   L+ +            LQ ++  HE  I   +   DPL+ W
Sbjct: 16  IEQSKENIEPRKAGHSASALAKSSSRNHTEKEVAGLQKERMGHERKIETSESLDDPLQVW 75

Query: 482 FNYIQWVEQSFPK-HGHEGHIDKLIKDCLQLFENDKKYYQDRRFVKLWIKYVDCLSNPLE 658
            +YI+W   +FP+       +  L++ C + F  +  Y  D R++++W++YV+ +  P+E
Sbjct: 76  IDYIKWTLDNFPQGETKTSGLVTLLERCTREFVRNPLYKDDVRYLRIWMQYVNYIDEPVE 135

Query: 659 IYQRLYSTGIGVECAEFYRAWACYCEESSDYKKA 760
           ++  L    IG E + FY  +A Y E    ++KA
Sbjct: 136 LFSFLAHHHIGQESSIFYEEYANYFESRGLFQKA 169


>SPCC1322.12c |bub1||serine/threonine protein kinase
           Bub1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1044

 Score = 35.9 bits (79), Expect = 0.008
 Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 8/107 (7%)
 Frame = +2

Query: 464 DPLEPWFNYIQWV-EQSFPKHGHEGHIDKLIKDCLQLFENDKKYYQDRRFVKLWI-KYVD 637
           DP++ W+  I+W+ E  F   G E  ++K++ D +Q  E  +    D R + + + K   
Sbjct: 48  DPVDVWYRCIEWLLETRFL--GMET-VNKMLDDAIQYLERCRFALNDVRHLLIQLAKIKQ 104

Query: 638 CLSNPLEIYQ------RLYSTGIGVECAEFYRAWACYCEESSDYKKA 760
               P E+ Q      +L S GIG+E A FY  +         +K+A
Sbjct: 105 SYETPDELQQAAKQFYQLASKGIGLELALFYEEYGSLLIRMQRWKEA 151


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 555  KIAFNYLKMIRNIIKIEDLLSCGLNMW 635
            + AF+Y  ++RNI ++  LLS  L  W
Sbjct: 4684 EFAFDYYLVVRNIEELPQLLSSALRQW 4710


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
           Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
 Frame = +2

Query: 548 LIKDCLQLFENDKK---YYQDRRFVKLWIK 628
           LI  CLQ F   +K   Y+  RRF  +W+K
Sbjct: 23  LISGCLQYFYEVRKRSHYFHFRRFWTIWLK 52


>SPAC222.15 |meu13|SPAC821.01|Tat binding protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 216

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
 Frame = +2

Query: 533 GHIDKLIKDCLQLFEND----KKYYQDRR--FVKLWIKYVDCLSNPLEIYQRL 673
           G + ++ K+ +Q  + +    KK + +R+  F  LW    D L NP +++++L
Sbjct: 153 GTVKQISKEAMQKTDKNYDFAKKGFSNRKKMFYDLWHLITDSLENPKQLWEKL 205


>SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = +2

Query: 485 NYIQWVEQSFPKHGHEGHIDKLIKDCLQLFE 577
           +Y+QW + + P+ G   H+ ++ K+   +FE
Sbjct: 199 DYLQWKDDTLPEIGKLFHLQEVHKEYNPMFE 229


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,407,086
Number of Sequences: 5004
Number of extensions: 68830
Number of successful extensions: 166
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)