Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_D23
(897 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0697 + 5209325-5209557,5209690-5209749,5209894-5210038,521... 103 1e-22
12_01_0160 - 1212295-1213586,1213828-1213976,1214288-1214445,121... 75 1e-13
11_01_0161 - 1327286-1328592,1328819-1329000,1329279-1329436,132... 74 1e-13
07_03_0543 + 19272389-19272534,19273337-19273496,19273584-192737... 43 3e-04
10_08_0025 - 14243249-14243377,14243935-14244174,14244266-142443... 30 2.2
06_02_0043 - 10906806-10907036,10907757-10907897 30 2.2
05_05_0251 + 23616546-23617760 29 5.0
04_01_0066 - 652339-652382,652641-653593,654492-654568,655812-65... 29 5.0
02_04_0140 - 20156655-20156834,20157139-20159345,20159970-20160042 29 5.0
08_02_1148 - 24693323-24693877,24694092-24694315,24694519-246946... 29 6.6
>02_01_0697 +
5209325-5209557,5209690-5209749,5209894-5210038,
5210149-5210306,5210990-5211071,5211154-5211220,
5211302-5211347,5211441-5211606,5211729-5211814,
5211916-5211996,5212084-5212144
Length = 394
Score = 103 bits (248), Expect = 1e-22
Identities = 49/148 (33%), Positives = 85/148 (57%)
Frame = +2
Query: 317 KENIQPLRGGRNLVQLSTALQAQSDADAQKQLQIQKEEHETAIRNYQGPDPLEPWFNYIQ 496
KEN++PL+ GRN+ L+ AL+A +D + L + + AI Y G DPL+PW + I+
Sbjct: 42 KENVRPLKRGRNVGLLNRALKAHADPAQRAALLAARRKMIEAIDEYSGEDPLQPWIDCIK 101
Query: 497 WVEQSFPKHGHEGHIDKLIKDCLQLFENDKKYYQDRRFVKLWIKYVDCLSNPLEIYQRLY 676
WV++SFP G + + + C++ F +D +Y D R++K+W++Y ++ I++ L
Sbjct: 102 WVQESFPTGGDCSGLVVIYEQCVRAFWHDDRYKNDLRYLKVWLEYAGNCADSEVIFRFLE 161
Query: 677 STGIGVECAEFYRAWACYCEESSDYKKA 760
+ IG +Y ++A E + KKA
Sbjct: 162 ANQIGQSHTNYYLSYASVMESKNKLKKA 189
>12_01_0160 -
1212295-1213586,1213828-1213976,1214288-1214445,
1214860-1215004,1215102-1215226
Length = 622
Score = 74.5 bits (175), Expect = 1e-13
Identities = 30/106 (28%), Positives = 61/106 (57%)
Frame = +2
Query: 443 IRNYQGPDPLEPWFNYIQWVEQSFPKHGHEGHIDKLIKDCLQLFENDKKYYQDRRFVKLW 622
IR+Y G DPL PW ++ +E + P + + ++ C Q F++D +Y D R++++W
Sbjct: 28 IRSYSGSDPLRPWLRGMRKMEAALPPATLRAKLPRFLQKCAQEFQDDARYRDDSRYLRVW 87
Query: 623 IKYVDCLSNPLEIYQRLYSTGIGVECAEFYRAWACYCEESSDYKKA 760
I+ +D + + + +++ IG++ + FY A+A Y E+ ++ A
Sbjct: 88 IQLMDYVKDAKPLLKKMEKNRIGLKRSAFYMAYAVYYEKHKRFEDA 133
Score = 30.7 bits (66), Expect = 1.6
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +1
Query: 742 KRL*EGNQVYMLGLQAKAQPLDELEQAHMNF 834
KR + +Y LG Q A+P+ EL++AH F
Sbjct: 128 KRFEDAENMYRLGTQNLAEPVGELQKAHEQF 158
>11_01_0161 -
1327286-1328592,1328819-1329000,1329279-1329436,
1329852-1329996,1330083-1330207
Length = 638
Score = 74.1 bits (174), Expect = 1e-13
Identities = 30/106 (28%), Positives = 61/106 (57%)
Frame = +2
Query: 443 IRNYQGPDPLEPWFNYIQWVEQSFPKHGHEGHIDKLIKDCLQLFENDKKYYQDRRFVKLW 622
IR+Y G DPL PW ++ +E + P + + ++ C Q F++D +Y D R++++W
Sbjct: 28 IRSYSGSDPLRPWLRGMRKMEAALPPATLRAKLPRFLQKCAQEFQDDARYRDDPRYLRVW 87
Query: 623 IKYVDCLSNPLEIYQRLYSTGIGVECAEFYRAWACYCEESSDYKKA 760
I+ +D + + + +++ IG++ + FY A+A Y E+ ++ A
Sbjct: 88 IQLMDYVKDAKPLLKKMEKNRIGLKRSAFYMAYALYYEKHKRFEDA 133
>07_03_0543 +
19272389-19272534,19273337-19273496,19273584-19273741,
19273852-19273945,19274082-19274198,19275119-19275229,
19275309-19275396,19275615-19275718,19275796-19275867,
19275950-19276039,19276151-19276308,19276746-19276752,
19277140-19277194,19277273-19277421,19277543-19277664,
19277916-19278105
Length = 606
Score = 43.2 bits (97), Expect = 3e-04
Identities = 26/99 (26%), Positives = 51/99 (51%), Gaps = 9/99 (9%)
Frame = +2
Query: 461 PDPLEPWFNYIQWVEQSF------PKHGHEGHIDKL---IKDCLQLFENDKKYYQDRRFV 613
P PL+P Y++ + ++ PK +D+L + +C+ + +D +Y D R +
Sbjct: 38 PPPLDPILPYLRSINKAMDELRTGPKF-EAAALDRLKICVMECIDKYGDDYQYSTDPRLL 96
Query: 614 KLWIKYVDCLSNPLEIYQRLYSTGIGVECAEFYRAWACY 730
K+WI Y D + + + Y++L + +E A Y A+A +
Sbjct: 97 KIWILYADAIGDFDKAYKQLEEKRMFLEHALLYDAYALF 135
Score = 30.7 bits (66), Expect = 1.6
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +1
Query: 754 EGNQVYMLGLQAKAQPLDELEQAHMNF 834
E +VY +G+ KA+PLD L++ H F
Sbjct: 144 EAGKVYEVGISRKAEPLDHLKKMHTIF 170
>10_08_0025 -
14243249-14243377,14243935-14244174,14244266-14244360,
14245120-14245198,14249528-14250202,14250288-14250338,
14250439-14250813
Length = 547
Score = 30.3 bits (65), Expect = 2.2
Identities = 21/70 (30%), Positives = 36/70 (51%)
Frame = +2
Query: 461 PDPLEPWFNYIQWVEQSFPKHGHEGHIDKLIKDCLQLFENDKKYYQDRRFVKLWIKYVDC 640
PD LE NY + ++ + +H H D+ I+ CL+ +D +++++WIK D
Sbjct: 432 PDKLE---NYEEKLKSFYCEHIHA---DEEIRYCLEGSGYFDVRDKDDKWIRIWIKEGDM 485
Query: 641 LSNPLEIYQR 670
+ P IY R
Sbjct: 486 IILPAGIYHR 495
>06_02_0043 - 10906806-10907036,10907757-10907897
Length = 123
Score = 30.3 bits (65), Expect = 2.2
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +2
Query: 551 IKDCLQLFENDKKYYQDRRFVKLWIKYV 634
+ +C+ + +D +Y D R +K+WI YV
Sbjct: 92 VMECIDKYGDDYQYSTDPRLLKIWILYV 119
>05_05_0251 + 23616546-23617760
Length = 404
Score = 29.1 bits (62), Expect = 5.0
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = -1
Query: 255 TLPTTPQNTDLIVLNFCHYFKC*APDLHFYFTQAQFLSIIIVNRI 121
TL + P+N D + CHY + P +H ++ Q + + RI
Sbjct: 135 TLSSPPENEDCLAAAICHYCQETGPRVHRFWRMGQHQAALKRTRI 179
>04_01_0066 -
652339-652382,652641-653593,654492-654568,655812-655917,
656200-656261,656676-656784,657015-657385
Length = 573
Score = 29.1 bits (62), Expect = 5.0
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +2
Query: 545 KLIKDCLQLFENDKKYYQDRRFVKLWIKYVDCLSN 649
+LI++C F++D + Y R W + CL+N
Sbjct: 494 ELIEECKNEFQSDMENYTSRYMTASWGPAISCLNN 528
>02_04_0140 - 20156655-20156834,20157139-20159345,20159970-20160042
Length = 819
Score = 29.1 bits (62), Expect = 5.0
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 581 DKKYYQDRRFVKLWIKYVDCLSNP 652
D KY DR +K W KY CL+ P
Sbjct: 585 DIKYMPDRYILKRWTKYGRCLTAP 608
>08_02_1148 -
24693323-24693877,24694092-24694315,24694519-24694636,
24694761-24695132,24696998-24697324
Length = 531
Score = 28.7 bits (61), Expect = 6.6
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 203 WQKFSTIKSVFCGVVGSVFPY 265
W+ F+T SVFCGV PY
Sbjct: 108 WENFNTSDSVFCGVFDGHGPY 128
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,156,822
Number of Sequences: 37544
Number of extensions: 398968
Number of successful extensions: 892
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 892
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -