Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_D23
         (897 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000194-4|AAK39378.2|  390|Caenorhabditis elegans Suspended ani...    52   6e-07
Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z81522-1|CAB61004.1|  264|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical pr...    29   3.4  
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr...    29   3.4  
AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein...    29   3.4  
AC026301-10|AAK68893.1| 1173|Caenorhabditis elegans Hypothetical...    29   3.4  
Z69884-10|CAA93753.1|  400|Caenorhabditis elegans Hypothetical p...    28   7.9  
Z69883-7|CAA93745.1|  400|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>AF000194-4|AAK39378.2|  390|Caenorhabditis elegans Suspended
           animation (anoxia-induced)defective protein 1 protein.
          Length = 390

 Score = 52.0 bits (119), Expect = 6e-07
 Identities = 42/171 (24%), Positives = 78/171 (45%), Gaps = 4/171 (2%)
 Frame = +2

Query: 260 PYAVIFQR*NNCKMDIDFSK--ENIQPLRGGRNLVQLSTALQ-AQSDADAQKQLQIQKEE 430
           PY    ++ NN   + D+ +  EN++P R GR +  L   ++   ++  A+ +L    EE
Sbjct: 5   PYVFTLKKRNNDDAEDDWDRYSENVRPTRRGRKIDALKRNVEEVVTEETARLKLDQLLEE 64

Query: 431 HETAIRNYQGPDPLEPWFNYIQWVEQSFPKHGHEGHIDKLIKDCLQLFENDKKYYQDRRF 610
            +  +   +  + L+   ++  W E+      H+ + + L K  +      +KY +D R 
Sbjct: 65  LQN-LECSEESEELQKILDFCSWFEEKLAIGFHKVYYELLWK-IISRHGFLEKYKEDERM 122

Query: 611 VKLWIKYVD-CLSNPLEIYQRLYSTGIGVECAEFYRAWACYCEESSDYKKA 760
           +K+W K  D    +  +IYQ   S    V+CA  Y  W+   E +  Y +A
Sbjct: 123 LKIWEKMADNSAGHAHDIYQFAISRKSLVKCAALYARWSQSVELAGAYVEA 173


>Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical protein
            F15D3.1a protein.
          Length = 3674

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
 Frame = +2

Query: 314  SKENIQPLRGGRNLVQLSTALQAQSDA-DAQKQLQIQKE--EHETAIRNYQ 457
            S+    PLR GR++V L +  Q+Q+D  D  K L++ K+  EH + I   Q
Sbjct: 3500 SRGGTLPLRNGRSVVSLKST-QSQNDVMDEAKALRLHKQRLEHRSRILEQQ 3549


>Z81522-1|CAB61004.1|  264|Caenorhabditis elegans Hypothetical
           protein F15D3.1b protein.
          Length = 264

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
 Frame = +2

Query: 314 SKENIQPLRGGRNLVQLSTALQAQSDA-DAQKQLQIQKE--EHETAIRNYQ 457
           S+    PLR GR++V L +  Q+Q+D  D  K L++ K+  EH + I   Q
Sbjct: 90  SRGGTLPLRNGRSVVSLKST-QSQNDVMDEAKALRLHKQRLEHRSRILEQQ 139


>Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical protein
            F15D3.1a protein.
          Length = 3674

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
 Frame = +2

Query: 314  SKENIQPLRGGRNLVQLSTALQAQSDA-DAQKQLQIQKE--EHETAIRNYQ 457
            S+    PLR GR++V L +  Q+Q+D  D  K L++ K+  EH + I   Q
Sbjct: 3500 SRGGTLPLRNGRSVVSLKST-QSQNDVMDEAKALRLHKQRLEHRSRILEQQ 3549


>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
           translation initiationfactor eIF5B protein.
          Length = 1074

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 15/56 (26%), Positives = 25/56 (44%)
 Frame = +2

Query: 314 SKENIQPLRGGRNLVQLSTALQAQSDADAQKQLQIQKEEHETAIRNYQGPDPLEPW 481
           +K+  +  R    L QL  A +A +DA A    +   E   T     + P+P++ W
Sbjct: 332 AKQEEKKRRRLEKLGQLPVAAEASADASASASAEASAETPSTTPEQEKTPEPVDDW 387


>AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein
            protein.
          Length = 3674

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
 Frame = +2

Query: 314  SKENIQPLRGGRNLVQLSTALQAQSDA-DAQKQLQIQKE--EHETAIRNYQ 457
            S+    PLR GR++V L +  Q+Q+D  D  K L++ K+  EH + I   Q
Sbjct: 3500 SRGGTLPLRNGRSVVSLKST-QSQNDVMDEAKALRLHKQRLEHRSRILEQQ 3549


>AC026301-10|AAK68893.1| 1173|Caenorhabditis elegans Hypothetical
           protein Y54F10BM.2 protein.
          Length = 1173

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 15/56 (26%), Positives = 25/56 (44%)
 Frame = +2

Query: 314 SKENIQPLRGGRNLVQLSTALQAQSDADAQKQLQIQKEEHETAIRNYQGPDPLEPW 481
           +K+  +  R    L QL  A +A +DA A    +   E   T     + P+P++ W
Sbjct: 332 AKQEEKKRRRLEKLGQLPVAAEASADASASASAEASAETPSTTPEQEKTPEPVDDW 387


>Z69884-10|CAA93753.1|  400|Caenorhabditis elegans Hypothetical
           protein C27C12.3 protein.
          Length = 400

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
 Frame = +2

Query: 548 LIKDCLQLFENDK--KYYQDRRFVKLWIKYVDCLSN--PLEIYQRLYSTGIGVECAEFYR 715
           LIK    +  ++K  K   D   +KL      C +     E+Y + Y  G+  +  EFY 
Sbjct: 59  LIKSMTNILHDEKFEKIRGDEAMLKLLELLAKCSTKIGGTEVYNQAYGIGLFNKYKEFYF 118

Query: 716 AWACYC 733
            WA  C
Sbjct: 119 QWAHEC 124


>Z69883-7|CAA93745.1|  400|Caenorhabditis elegans Hypothetical
           protein C27C12.3 protein.
          Length = 400

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
 Frame = +2

Query: 548 LIKDCLQLFENDK--KYYQDRRFVKLWIKYVDCLSN--PLEIYQRLYSTGIGVECAEFYR 715
           LIK    +  ++K  K   D   +KL      C +     E+Y + Y  G+  +  EFY 
Sbjct: 59  LIKSMTNILHDEKFEKIRGDEAMLKLLELLAKCSTKIGGTEVYNQAYGIGLFNKYKEFYF 118

Query: 716 AWACYC 733
            WA  C
Sbjct: 119 QWAHEC 124


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,831,463
Number of Sequences: 27780
Number of extensions: 386672
Number of successful extensions: 1017
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1016
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2276333906
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)