Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_D22
(890 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces... 31 0.22
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 29 1.2
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 27 3.6
SPAC23H3.08c |bub3||mitotic spindle checkpoint protein Bub3|Schi... 27 4.7
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos... 27 4.7
SPAC1687.15 |gsk3|skp1|serine/threonine protein kinase Gsk3|Schi... 27 4.7
SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr 3|||... 26 6.3
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc... 26 6.3
SPCC553.09c |spb70|pol12|DNA polymerase alpha B-subunit|Schizosa... 26 8.3
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F... 26 8.3
>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 637
Score = 31.1 bits (67), Expect = 0.22
Identities = 23/114 (20%), Positives = 51/114 (44%), Gaps = 1/114 (0%)
Frame = +1
Query: 187 NENRFIPQTRIPLPMEPLPALPRHLLKEINFKAFENSRQPLKTINSQSMPGQSNQSKSFN 366
N N F P PL MEPLP++ ++ + +++ P ++ + S+ +S
Sbjct: 228 NGNPF-PMNSPPLDMEPLPSISMDASDSVSEQLVKDASLPSGPFSTDYLENGSDLKRSLG 286
Query: 367 PMVPGHSRGK-IAPNQPKSPTNFDSKHVTTRQGNDDLDWNYNIFKDERNNSVIS 525
K ++P +P+ ++ T + D + N++ D +++S++S
Sbjct: 287 HNQKSDRVSKDVSPQHQANPSTLNNPLKT-----QNFDSSKNLYTDNKDSSLVS 335
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 28.7 bits (61), Expect = 1.2
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +1
Query: 289 ENSRQPLKTINSQSMPGQSNQSKSFNPMVPGHSRGKIAPNQPKSP 423
E S PLK + SN + P P H+ +AP QPK+P
Sbjct: 1422 ETSTMPLKASQPTNPGAPSNHAPQVVPPAPMHA---VAPVQPKAP 1463
>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 636
Score = 27.1 bits (57), Expect = 3.6
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 9/85 (10%)
Frame = +1
Query: 199 FIPQTRIPLPMEPLPALPRHLLKEINFKAFENSRQPLKTIN--------SQSMPGQSNQS 354
F P ++ P+ + +E+NF+++++ R +T S ++ + Q
Sbjct: 129 FPPSQQVRPSTSRSPSYASYNSEEVNFQSYQDPRLLPRTSQMYMPDNNYSPAVKSPAAQR 188
Query: 355 KSFNPMVPGHSRGKIAP-NQPKSPT 426
+S + MVP +SRG A N P PT
Sbjct: 189 RSSSYMVPANSRGSPANYNTPYYPT 213
>SPAC23H3.08c |bub3||mitotic spindle checkpoint protein
Bub3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 320
Score = 26.6 bits (56), Expect = 4.7
Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
Frame = +1
Query: 133 KFIIESLRVAIKMEANKENENRFIPQTRIPLPMEPLPALPRHLLKEI----NFKAFENSR 300
K S R I + E EN + LP + P+ +++ + + NF+ F +S
Sbjct: 138 KIFASSSRDNILVLGCSERENLVYDIRNLKLPFQRRPSSFKYMTRSVCCNQNFEGFVSSS 197
Query: 301 QPLKTINSQSMPGQSNQSKSF 363
+T P Q QSK+F
Sbjct: 198 IEGRTSVEYINPSQEAQSKNF 218
>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 640
Score = 26.6 bits (56), Expect = 4.7
Identities = 19/64 (29%), Positives = 24/64 (37%)
Frame = +1
Query: 295 SRQPLKTINSQSMPGQSNQSKSFNPMVPGHSRGKIAPNQPKSPTNFDSKHVTTRQGNDDL 474
SR P S + Q S N VP S P SPT+ S H +T +
Sbjct: 329 SRPPSMKALSSGVESQDESVASSNFQVPIISNPLFKSPAPYSPTSVISNHSSTGKSLVIS 388
Query: 475 DWNY 486
+W Y
Sbjct: 389 EWAY 392
>SPAC1687.15 |gsk3|skp1|serine/threonine protein kinase
Gsk3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 387
Score = 26.6 bits (56), Expect = 4.7
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +1
Query: 205 PQTRIPLPMEPLPALPRHLLKEINFKAFENSRQPLKTINSQSMPGQSNQS 354
P T++ P A PRHL + NF FE S +P +N + +P + +
Sbjct: 322 PNTKLHNSRNP-DASPRHLPELFNFSPFELSIRP--DLNQKLIPSHARDA 368
>SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 426
Score = 26.2 bits (55), Expect = 6.3
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = -3
Query: 690 LQASFYISNTTSLQSRRLHYRCNSHSSIFKTILSSILNKIPQ 565
L+ +YIS+T +L S + RC + +I K +++S+ N I +
Sbjct: 209 LELLYYISSTLTLTSLDQNIRC-TRCTIPKRVITSMHNNIAE 249
>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 26.2 bits (55), Expect = 6.3
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 601 FEDARMAITPVVKSSTLEAGG 663
F DA+++I P K TL+ GG
Sbjct: 431 FNDAKVSIVPAEKIETLDGGG 451
>SPCC553.09c |spb70|pol12|DNA polymerase alpha
B-subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 8.3
Identities = 18/70 (25%), Positives = 34/70 (48%)
Frame = +1
Query: 163 IKMEANKENENRFIPQTRIPLPMEPLPALPRHLLKEINFKAFENSRQPLKTINSQSMPGQ 342
+ ++ + + N FI + +P+P P P+ + + F A N+ QP+ +I S P
Sbjct: 259 VSVKGSNPSGNMFIAKEILPIPPLPFPSSSKQ--EHATFVANTNN-QPI-SIYIASGPWS 314
Query: 343 SNQSKSFNPM 372
SF+P+
Sbjct: 315 LRDDLSFSPL 324
>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 25.8 bits (54), Expect = 8.3
Identities = 16/46 (34%), Positives = 19/46 (41%)
Frame = +1
Query: 232 EPLPALPRHLLKEINFKAFENSRQPLKTINSQSMPGQSNQSKSFNP 369
EPL PRH L N + N PL + PGQ + NP
Sbjct: 359 EPLATPPRHPLNATNGTSQSNISTPL----PEPTPGQPRKVSGHNP 400
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,062,017
Number of Sequences: 5004
Number of extensions: 58305
Number of successful extensions: 148
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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