Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_D22
         (890 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0335 - 16903775-16904118,16904203-16904325,16904424-16905993     32   0.53 
09_02_0207 - 5793848-5794276,5794523-5794645,5794742-5795250,579...    29   5.0  

>07_03_0335 - 16903775-16904118,16904203-16904325,16904424-16905993
          Length = 678

 Score = 32.3 bits (70), Expect = 0.53
 Identities = 21/90 (23%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
 Frame = +1

Query: 259 LLKEINFKAFENSRQPLKTINSQSMPGQSNQSKS-FNPMVPGHSRGKIAPNQPKSPTNFD 435
           L K  N +   N R  +   +S+S  G+S+ S++  +PM+      + A +  +S  + D
Sbjct: 103 LAKHNNTEKVTNGRSHIGAFSSESGSGESDGSETDTHPMLHTFHHLRSATSSSRSSQDGD 162

Query: 436 SKHVTTRQGNDDLDWNYNIFKDERNNSVIS 525
           S   +   GN++ +   +   +E+N  V++
Sbjct: 163 SNDSSIEDGNENQEGKDDNEHEEKNGKVVA 192


>09_02_0207 -
           5793848-5794276,5794523-5794645,5794742-5795250,
           5795543-5795648,5795798-5795959,5796094-5796144,
           5796229-5796394,5796624-5797093
          Length = 671

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 4/86 (4%)
 Frame = +1

Query: 220 PLPMEPLPALPRHLLKEINFKAFENSRQPLKTINSQ--SMPGQSNQSKSFNPMVPGHSRG 393
           P P    P  P+         A   S + L+  NS   S  GQSN S S +P   G    
Sbjct: 557 PKPWSAFPEEPKAQAAVTVKGAHPRSVRTLRASNSNKASSLGQSNTSSSADPFAFGQDSF 616

Query: 394 KIAPNQ--PKSPTNFDSKHVTTRQGN 465
           K AP++  P   +N  +   +++  N
Sbjct: 617 KAAPSRALPSKMSNLGNGSQSSKMSN 642


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,341,659
Number of Sequences: 37544
Number of extensions: 349047
Number of successful extensions: 1016
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1015
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)