Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_D20
         (914 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0686 - 30900748-30902167,30903442-30904742                       33   0.42 
02_04_0400 - 22608519-22608844,22609044-22609122                       32   0.73 
01_03_0005 + 11568545-11569119,11569179-11569191                       31   1.7  
07_03_1136 + 24218601-24218734,24218769-24219906                       28   9.0  
06_03_1414 + 30012195-30012360,30012448-30012830                       28   9.0  

>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 32.7 bits (71), Expect = 0.42
 Identities = 18/48 (37%), Positives = 18/48 (37%)
 Frame = +2

Query: 569 PPPXGGXXXXPXXGGXPXKKFFXKXPQKXPXPKXXPXXGXFXQGPPPP 712
           PPP  G    P   G P        P K P P   P  G    GPPPP
Sbjct: 338 PPPPKGPPPPPPAKGPPPPP-----PPKGPSPPPPPPPGGKKGGPPPP 380



 Score = 31.1 bits (67), Expect = 1.3
 Identities = 16/51 (31%), Positives = 16/51 (31%)
 Frame = +3

Query: 468 PPPPGXGGXXXGXXXXXXXXXXXXXGXXGGGGXXPPPXGGXXXPPKXGXXP 620
           PPPP  G                  G   GG   PPP GG   PP     P
Sbjct: 346 PPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPPPPPPKGGASRPPAAPGVP 396


>02_04_0400 - 22608519-22608844,22609044-22609122
          Length = 134

 Score = 31.9 bits (69), Expect = 0.73
 Identities = 19/57 (33%), Positives = 19/57 (33%)
 Frame = +3

Query: 429 GGGXGGFXXXXKXPPPPGXGGXXXGXXXXXXXXXXXXXGXXGGGGXXPPPXGGXXXP 599
           GGG GG           G GG   G             G  GGGG  PP  GG   P
Sbjct: 48  GGGGGGGGGGGGGGGGRGGGGGGGGGGGGGGGGGGGGGGGGGGGGYYPPWNGGYYPP 104



 Score = 30.7 bits (66), Expect = 1.7
 Identities = 19/61 (31%), Positives = 19/61 (31%)
 Frame = +3

Query: 429 GGGXGGFXXXXKXPPPPGXGGXXXGXXXXXXXXXXXXXGXXGGGGXXPPPXGGXXXPPKX 608
           GGG GG             GG   G             G  GGGG   PP  G   PP  
Sbjct: 47  GGGGGGGGGGGGGGGGGRGGGGGGGGGGGGGGGGGGGGGGGGGGGGYYPPWNGGYYPPGP 106

Query: 609 G 611
           G
Sbjct: 107 G 107


>01_03_0005 + 11568545-11569119,11569179-11569191
          Length = 195

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 27/105 (25%), Positives = 29/105 (27%)
 Frame = +2

Query: 398 PPXXXFFXPXXGGGGGXXXXXKXPPPPGXXGXXFXXXXXXXXXXXXXXXXXGGGGXXPPP 577
           PP   +     GGGGG       PPPP   G                    GGGG   PP
Sbjct: 70  PPPPSYPSGGGGGGGGGTVMYTSPPPPYSGG--------------GGGSSTGGGGIYYPP 115

Query: 578 XGGXXXXPXXGGXPXKKFFXKXPQKXPXPKXXPXXGXFXQGPPPP 712
             G       G           P   P     P    +   PPPP
Sbjct: 116 PTGGGGGGGGGWQQGGGGGGAYPTPPPPNPFLPYFPFYYYSPPPP 160


>07_03_1136 + 24218601-24218734,24218769-24219906
          Length = 423

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +3

Query: 543 GXXGGGGXXPPPXGGXXXPP 602
           G  GGGG  PP  GG   PP
Sbjct: 99  GPLGGGGARPPGGGGGGGPP 118


>06_03_1414 + 30012195-30012360,30012448-30012830
          Length = 182

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +3

Query: 552 GGGGXXPPPXGGXXXPPKXG 611
           GGGG  PPP G    PP  G
Sbjct: 135 GGGGGSPPPSGVPLHPPAAG 154


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,665,491
Number of Sequences: 37544
Number of extensions: 315152
Number of successful extensions: 1169
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 923
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2600672280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)