Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_D20
(914 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 39 0.004
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 39 0.004
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 39 0.004
U55366-2|AAA97981.1| 156|Caenorhabditis elegans Hypothetical pr... 32 0.66
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 31 1.5
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 31 1.5
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 31 1.5
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 30 2.7
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 30 2.7
AC024790-13|AAL32247.1| 311|Caenorhabditis elegans Hypothetical... 30 2.7
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 29 4.6
Z81503-1|CAB04111.1| 305|Caenorhabditis elegans Hypothetical pr... 29 6.1
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 29 6.1
AC025721-11|AAK29900.1| 78|Caenorhabditis elegans Hypothetical... 29 6.1
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 39.1 bits (87), Expect = 0.004
Identities = 22/53 (41%), Positives = 22/53 (41%)
Frame = +2
Query: 554 GGGXXPPPXGGXXXXPXXGGXPXKKFFXKXPQKXPXPKXXPXXGXFXQGPPPP 712
GG PPP GG P GG P P P P P G F GPPPP
Sbjct: 740 GGPPPPPPPGGLP--PISGGPPPPP---PPPGGCPPPPPPPPPGGFKGGPPPP 787
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 39.1 bits (87), Expect = 0.004
Identities = 22/53 (41%), Positives = 22/53 (41%)
Frame = +2
Query: 554 GGGXXPPPXGGXXXXPXXGGXPXKKFFXKXPQKXPXPKXXPXXGXFXQGPPPP 712
GG PPP GG P GG P P P P P G F GPPPP
Sbjct: 740 GGPPPPPPPGGLP--PISGGPPPPP---PPPGGCPPPPPPPPPGGFKGGPPPP 787
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 39.1 bits (87), Expect = 0.004
Identities = 22/53 (41%), Positives = 22/53 (41%)
Frame = +2
Query: 554 GGGXXPPPXGGXXXXPXXGGXPXKKFFXKXPQKXPXPKXXPXXGXFXQGPPPP 712
GG PPP GG P GG P P P P P G F GPPPP
Sbjct: 323 GGPPPPPPPGGLP--PISGGPPPPP---PPPGGCPPPPPPPPPGGFKGGPPPP 370
>U55366-2|AAA97981.1| 156|Caenorhabditis elegans Hypothetical
protein F41F3.3 protein.
Length = 156
Score = 31.9 bits (69), Expect = 0.66
Identities = 17/54 (31%), Positives = 17/54 (31%)
Frame = +3
Query: 417 FXXXGGGXGGFXXXXKXPPPPGXGGXXXGXXXXXXXXXXXXXGXXGGGGXXPPP 578
F GG GG PPP G G GGGG PPP
Sbjct: 17 FLLPSGGGGGCGCAPPPPPPSPCGCGGGGGLALPQLPPLSLPSLGGGGGCCPPP 70
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 30.7 bits (66), Expect = 1.5
Identities = 25/111 (22%), Positives = 27/111 (24%)
Frame = +2
Query: 551 GGGGXXPPPXGGXXXXPXXGGXPXKKFFXKXPQKXPXPKXXPXXGXFXQGPPPPXKXKKX 730
G G PPP G P G P P P G PPPP +
Sbjct: 251 GSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAG--SPPPPPPPRGSPP 308
Query: 731 XXXXXXXXXXXXXXKKXXXSPNPRPFTGXXXXXRAXXDPGXPXXXPPXXFP 883
SP P P R+ P PP P
Sbjct: 309 TGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSPPTGSPPTGRP 359
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 30.7 bits (66), Expect = 1.5
Identities = 25/111 (22%), Positives = 27/111 (24%)
Frame = +2
Query: 551 GGGGXXPPPXGGXXXXPXXGGXPXKKFFXKXPQKXPXPKXXPXXGXFXQGPPPPXKXKKX 730
G G PPP G P G P P P G PPPP +
Sbjct: 272 GSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAG--SPPPPPPPRGSPP 329
Query: 731 XXXXXXXXXXXXXXKKXXXSPNPRPFTGXXXXXRAXXDPGXPXXXPPXXFP 883
SP P P R+ P PP P
Sbjct: 330 TGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSPPTGSPPTGRP 380
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 30.7 bits (66), Expect = 1.5
Identities = 25/111 (22%), Positives = 27/111 (24%)
Frame = +2
Query: 551 GGGGXXPPPXGGXXXXPXXGGXPXKKFFXKXPQKXPXPKXXPXXGXFXQGPPPPXKXKKX 730
G G PPP G P G P P P G PPPP +
Sbjct: 257 GSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAG--SPPPPPPPRGSPP 314
Query: 731 XXXXXXXXXXXXXXKKXXXSPNPRPFTGXXXXXRAXXDPGXPXXXPPXXFP 883
SP P P R+ P PP P
Sbjct: 315 TGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSPPTGSPPTGRP 365
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 29.9 bits (64), Expect = 2.7
Identities = 15/44 (34%), Positives = 15/44 (34%)
Frame = +3
Query: 468 PPPPGXGGXXXGXXXXXXXXXXXXXGXXGGGGXXPPPXGGXXXP 599
PPPPG G G G GG PPP G P
Sbjct: 301 PPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYP 344
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 29.9 bits (64), Expect = 2.7
Identities = 15/44 (34%), Positives = 15/44 (34%)
Frame = +3
Query: 468 PPPPGXGGXXXGXXXXXXXXXXXXXGXXGGGGXXPPPXGGXXXP 599
PPPPG G G G GG PPP G P
Sbjct: 311 PPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYP 354
>AC024790-13|AAL32247.1| 311|Caenorhabditis elegans Hypothetical
protein Y47D7A.13 protein.
Length = 311
Score = 29.9 bits (64), Expect = 2.7
Identities = 18/54 (33%), Positives = 18/54 (33%)
Frame = +3
Query: 411 FFFXXXGGGXGGFXXXXKXPPPPGXGGXXXGXXXXXXXXXXXXXGXXGGGGXXP 572
F F GGG GG PPPP GG G GGG P
Sbjct: 16 FLFNLLGGGGGG---CCAPPPPPPCGGGCGGGAPAAGGYAVAPQAPIGGGYAQP 66
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 29.1 bits (62), Expect = 4.6
Identities = 21/63 (33%), Positives = 22/63 (34%)
Frame = +3
Query: 432 GGXGGFXXXXKXPPPPGXGGXXXGXXXXXXXXXXXXXGXXGGGGXXPPPXGGXXXPPKXG 611
GG GG+ PPPPG G G GG G PP G PP G
Sbjct: 404 GGPGGYG-----PPPPGGPGAPGSYGPPQ--------GGPGGFGPPPPGGPGAYGPPPTG 450
Query: 612 XXP 620
P
Sbjct: 451 FPP 453
>Z81503-1|CAB04111.1| 305|Caenorhabditis elegans Hypothetical
protein F14F7.1 protein.
Length = 305
Score = 28.7 bits (61), Expect = 6.1
Identities = 16/48 (33%), Positives = 16/48 (33%)
Frame = +3
Query: 429 GGGXGGFXXXXKXPPPPGXGGXXXGXXXXXXXXXXXXXGXXGGGGXXP 572
GGG GG P PPG GG G G GG P
Sbjct: 93 GGGGGGQCSTCCRPGPPGAGGTPGKPGRPGAPGAWGMPGNPGKGGSGP 140
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical
protein E02A10.2 protein.
Length = 385
Score = 28.7 bits (61), Expect = 6.1
Identities = 18/53 (33%), Positives = 18/53 (33%)
Frame = +3
Query: 429 GGGXGGFXXXXKXPPPPGXGGXXXGXXXXXXXXXXXXXGXXGGGGXXPPPXGG 587
GGG GG PPPP GG G G G GG GG
Sbjct: 45 GGGCGG--GCAPPPPPPACGGGCGGGGGGCGGGGGGCGGGGGCGGGGGGCGGG 95
Score = 28.7 bits (61), Expect = 6.1
Identities = 18/53 (33%), Positives = 18/53 (33%)
Frame = +3
Query: 429 GGGXGGFXXXXKXPPPPGXGGXXXGXXXXXXXXXXXXXGXXGGGGXXPPPXGG 587
GGG GG PPPP GG G G GGG GG
Sbjct: 102 GGGCGG--GCAPPPPPPACGGGCGGGGGGCGGGCGGGGGGGCGGGGGGGCGGG 152
>AC025721-11|AAK29900.1| 78|Caenorhabditis elegans Hypothetical
protein Y48G8AL.12 protein.
Length = 78
Score = 28.7 bits (61), Expect = 6.1
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +2
Query: 413 FFXPXXGGGGGXXXXXKXPPPP 478
F P GGGGG PPPP
Sbjct: 17 FLFPSAGGGGGGCGCGAPPPPP 38
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,884,122
Number of Sequences: 27780
Number of extensions: 180466
Number of successful extensions: 870
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2339274014
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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