Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_D19
         (959 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC630.11 |vps55||vacuolar sorting protein Vps55 |Schizosacchar...    37   0.005
SPBC1271.02 |stt3||oligosaccharyltransferase subunit Stt3|Schizo...    31   0.32 

>SPAC630.11 |vps55||vacuolar sorting protein Vps55
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 122

 Score = 36.7 bits (81), Expect = 0.005
 Identities = 22/90 (24%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
 Frame = +1

Query: 319 LVSLAXAGSIGMTFVILACALPQYKLWWPFFVVLFYILCPIPTMIARRHT---DGAGGSN 489
           ++ L+   ++G   VIL+CAL  +K W+P       ++ P+P ++ ++++   D     +
Sbjct: 7   IIGLSSVLAVGFMLVILSCAL--FKNWYPL------LIAPLPNLLTKKYSTSHDFLQEED 58

Query: 490 SACMETAVFITMGFLVSSFALPIVLARAGV 579
              ++   F     + + FALPIV    G+
Sbjct: 59  RNLLDFGRFTFGATICTGFALPIVFVNVGL 88


>SPBC1271.02 |stt3||oligosaccharyltransferase subunit
           Stt3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 752

 Score = 30.7 bits (66), Expect = 0.32
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +1

Query: 517 ITMGFLVSSFALPIVLARAGVXFWGAC 597
           I +  L+S+FAL I   ++G  FWGAC
Sbjct: 177 IAITLLMSTFALWIKAVKSGSSFWGAC 203


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,571,463
Number of Sequences: 5004
Number of extensions: 41966
Number of successful extensions: 70
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 491307756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)