Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_D17
(1015 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 41 2e-04
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 35 0.016
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 33 0.064
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 30 0.45
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 29 1.0
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 29 1.0
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 28 1.8
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 3.2
SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces pom... 26 9.7
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 9.7
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 41.1 bits (92), Expect = 2e-04
Identities = 20/47 (42%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Frame = +2
Query: 590 PPXXXXXLPXXXP-PXPXXPPPP-XGGGXXPXXXPXXGGXXPPPPPP 724
PP +P P P P PP P GG P P G PPPPPP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
Score = 40.3 bits (90), Expect = 4e-04
Identities = 18/47 (38%), Positives = 18/47 (38%)
Frame = +2
Query: 614 PXXXPPXPXXPPPPXGGGXXPXXXPXXGGXXPPPPPPXXXGXXKTPP 754
P PP P P P P GG PPPPPP G PP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778
Score = 34.7 bits (76), Expect = 0.021
Identities = 15/38 (39%), Positives = 15/38 (39%)
Frame = +3
Query: 612 SPXXXPXPPXXPPPPXGGXXXPXXLXXXGGXPPPPPPP 725
SP P P P P GG PPPPPPP
Sbjct: 731 SPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPP 768
Score = 27.5 bits (58), Expect = 3.2
Identities = 14/39 (35%), Positives = 15/39 (38%)
Frame = +1
Query: 784 PXPPPPXGEGXXXXFXPXPXXXPPPPPXXKKKKXXXPAP 900
P PPPP G P P PPP + PAP
Sbjct: 762 PPPPPPPGVAGAG---PPPPPPPPPAVSAGGSRYYAPAP 797
Score = 26.2 bits (55), Expect = 7.4
Identities = 11/36 (30%), Positives = 12/36 (33%)
Frame = +1
Query: 751 PTKTXGGXKXXPXPPPPXGEGXXXXFXPXPXXXPPP 858
P G P PPP G + P P P P
Sbjct: 768 PGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEPEP 803
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 35.1 bits (77), Expect = 0.016
Identities = 21/75 (28%), Positives = 22/75 (29%), Gaps = 2/75 (2%)
Frame = +3
Query: 645 PPPPXGGXXXPXXLXXXGGXPPPPPPPXXXXKXKXPHXNXXGXKK--XTXXXXXRGGGXX 818
P PP L PPPPPPP + K P N
Sbjct: 291 PLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGS 350
Query: 819 XXLXPXPXXXPPPPP 863
L P PPPPP
Sbjct: 351 IPLPPQGRSAPPPPP 365
Score = 34.3 bits (75), Expect = 0.028
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = +2
Query: 635 PXXPPPPXGGGXXPXXXPXXGGXXPPPPPP 724
P PPPP P G PPPPPP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366
Score = 31.5 bits (68), Expect = 0.20
Identities = 17/57 (29%), Positives = 18/57 (31%)
Frame = +2
Query: 584 GXPPXXXXXLPXXXPPXPXXPPPPXGGGXXPXXXPXXGGXXPPPPPPXXXGXXKTPP 754
G PP PP P PPP P PPPPP + PP
Sbjct: 323 GKPPIGNGSSNSSLPPPP--PPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPP 377
Score = 31.1 bits (67), Expect = 0.26
Identities = 16/47 (34%), Positives = 17/47 (36%), Gaps = 2/47 (4%)
Frame = +3
Query: 591 PPXXAXXSPXXXPXPPXXP--PPPXGGXXXPXXLXXXGGXPPPPPPP 725
PP +P P PP P PP G L PPP P P
Sbjct: 436 PPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAP 482
Score = 29.5 bits (63), Expect = 0.79
Identities = 12/36 (33%), Positives = 13/36 (36%)
Frame = +2
Query: 647 PPPXGGGXXPXXXPXXGGXXPPPPPPXXXGXXKTPP 754
PP P P PPP PP G +PP
Sbjct: 233 PPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPP 268
Score = 29.5 bits (63), Expect = 0.79
Identities = 12/32 (37%), Positives = 12/32 (37%)
Frame = +2
Query: 629 PXPXXPPPPXGGGXXPXXXPXXGGXXPPPPPP 724
P P PP G P PPPPPP
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPP 342
Score = 27.5 bits (58), Expect = 3.2
Identities = 17/50 (34%), Positives = 17/50 (34%), Gaps = 5/50 (10%)
Frame = +2
Query: 590 PPXXXXXLPXXXPPXPXXPP-----PPXGGGXXPXXXPXXGGXXPPPPPP 724
PP LP P P PP PP G P P PPP P
Sbjct: 432 PPSAPPSLPMGAPAAPPLPPSAPIAPPLPAG-MPAAPPLPPAAPAPPPAP 480
Score = 25.8 bits (54), Expect = 9.7
Identities = 10/27 (37%), Positives = 10/27 (37%)
Frame = +1
Query: 784 PXPPPPXGEGXXXXFXPXPXXXPPPPP 864
P PPP P PPPPP
Sbjct: 339 PPPPPRSNAAGSIPLPPQGRSAPPPPP 365
Score = 25.8 bits (54), Expect = 9.7
Identities = 15/45 (33%), Positives = 15/45 (33%), Gaps = 3/45 (6%)
Frame = +2
Query: 611 LPXXXPPXPXXPPP---PXGGGXXPXXXPXXGGXXPPPPPPXXXG 736
LP P PPP P G P PP PPP G
Sbjct: 353 LPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPG 397
Score = 22.6 bits (46), Expect(2) = 7.1
Identities = 11/29 (37%), Positives = 11/29 (37%)
Frame = +3
Query: 591 PPXXAXXSPXXXPXPPXXPPPPXGGXXXP 677
PP A P P PP P PP P
Sbjct: 457 PPLPAGM-PAAPPLPPAAPAPPPAPAPAP 484
Score = 21.8 bits (44), Expect(2) = 7.1
Identities = 10/26 (38%), Positives = 11/26 (42%)
Frame = +3
Query: 414 PPNXPXKKXXGAPXPPXXFXXXPPAP 491
PP+ P GAP P P AP
Sbjct: 432 PPSAPPSLPMGAPAAPPLPPSAPIAP 457
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 33.1 bits (72), Expect = 0.064
Identities = 18/39 (46%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = +1
Query: 784 PXPPPPXGEGXXXXFXPXPXXXPPPPPX-XKKKKXXXPA 897
P PPPP G F P PPPPP KK+K PA
Sbjct: 10 PPPPPPPG------FEPPSQPPPPPPPGYVKKRKNKTPA 42
Score = 31.9 bits (69), Expect = 0.15
Identities = 16/38 (42%), Positives = 16/38 (42%)
Frame = +3
Query: 633 PPXXPPPPXGGXXXPXXLXXXGGXPPPPPPPXXXXKXK 746
PP PPPP P PPPPPPP K K
Sbjct: 5 PPGNPPPPP-----PPPGFEPPSQPPPPPPPGYVKKRK 37
Score = 28.3 bits (60), Expect = 1.8
Identities = 14/32 (43%), Positives = 14/32 (43%)
Frame = +2
Query: 626 PPXPXXPPPPXGGGXXPXXXPXXGGXXPPPPP 721
PP PPPP G P P PPPPP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPP------PPPPP 30
Score = 27.5 bits (58), Expect = 3.2
Identities = 11/28 (39%), Positives = 12/28 (42%)
Frame = +2
Query: 695 GGXXPPPPPPXXXGXXKTPPXKXXGXXK 778
G PPPPPP + PP G K
Sbjct: 7 GNPPPPPPPPGFEPPSQPPPPPPPGYVK 34
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 30.3 bits (65), Expect = 0.45
Identities = 14/45 (31%), Positives = 15/45 (33%)
Frame = +3
Query: 591 PPXXAXXSPXXXPXPPXXPPPPXGGXXXPXXLXXXGGXPPPPPPP 725
PP + P PPPP P G P PPPP
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734
Score = 26.2 bits (55), Expect = 7.4
Identities = 12/36 (33%), Positives = 12/36 (33%)
Frame = +3
Query: 615 PXXXPXPPXXPPPPXGGXXXPXXLXXXGGXPPPPPP 722
P P PP PP P G P P P P
Sbjct: 1711 PMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746
Score = 25.8 bits (54), Expect = 9.7
Identities = 17/50 (34%), Positives = 17/50 (34%), Gaps = 3/50 (6%)
Frame = +2
Query: 614 PXXXPPX-PXXPPPPXGGGXXPXXXPXXGGXXPPPP--PPXXXGXXKTPP 754
P PP P PP P P PPPP PP G PP
Sbjct: 1686 PVSTPPVRPQSAAPPQMSAPTPPPPPMS---VPPPPSAPPMPAGPPSAPP 1732
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 29.1 bits (62), Expect = 1.0
Identities = 25/124 (20%), Positives = 32/124 (25%), Gaps = 1/124 (0%)
Frame = +3
Query: 612 SPXXXPXPPXXPPPPXGGXXXPXXLXXXGGXPPPPPPPXXXXKXKXPH-XNXXGXKKXTX 788
+P PP PP PPPPPPP + + +
Sbjct: 160 APNSMVSPPPSFQPPSAAAPATSLPSDYNPPPPPPPPPAVEDQAADANEPDDYYSSGRAV 219
Query: 789 XXXXRGGGXXXXLXPXPXXXPPPPPXXKKKKXXXPRPXKXXXGRXXXFXFXXXXPPPXTX 968
P P PPPPP + + PPP T
Sbjct: 220 SPEIPPTYTPKQADPLPAPPPPPPPTLPPQSTNTSQLPMPSRNVNNLGSQVNIPPPPATP 279
Query: 969 TXPP 980
+ PP
Sbjct: 280 SQPP 283
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 29.1 bits (62), Expect = 1.0
Identities = 16/45 (35%), Positives = 16/45 (35%)
Frame = -1
Query: 724 GGGGGGGXPPXXXXXXGXXXPPXGGGGXXGGXGXXXGEXXAXXGG 590
G GGG G PP G G G GG G G GG
Sbjct: 192 GFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGG 236
Score = 29.1 bits (62), Expect = 1.0
Identities = 16/44 (36%), Positives = 16/44 (36%)
Frame = -1
Query: 721 GGGGGGXPPXXXXXXGXXXPPXGGGGXXGGXGXXXGEXXAXXGG 590
GG GGG G P G GG GG G G GG
Sbjct: 224 GGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGG 267
Score = 27.5 bits (58), Expect = 3.2
Identities = 17/43 (39%), Positives = 17/43 (39%)
Frame = -2
Query: 753 GGVXFXPXXXGGGGGGXXPPXXGXXXGXXPPPXGGGGXXGXGG 625
GG P GGG GG G G P GGG G GG
Sbjct: 231 GGFEGGPGGFGGGPGGFGGGLGGFGGG---PGGFGGGPGGHGG 270
Score = 26.6 bits (56), Expect = 5.6
Identities = 13/32 (40%), Positives = 13/32 (40%)
Frame = -2
Query: 720 GGGGGXXPPXXGXXXGXXPPPXGGGGXXGXGG 625
G GG G G P P G GG G GG
Sbjct: 184 GHNGGGFGGFGGGSGGPPPGPGGFGGFGGFGG 215
Score = 26.6 bits (56), Expect = 5.6
Identities = 23/82 (28%), Positives = 23/82 (28%)
Frame = -3
Query: 857 GGGXXXGXGXKXXXXPSPXGGGGXGXFFXPPXVXVGXFXFXPXXXXXXXXXXXXXXXEXX 678
GGG G P P G GG G F G F
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGG 246
Query: 677 XGXXPPPXGGGXPXGXGGXXGG 612
G GGG P G GG GG
Sbjct: 247 FGGGLGGFGGG-PGGFGGGPGG 267
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 28.3 bits (60), Expect = 1.8
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = +3
Query: 696 GGXPPPPPPP 725
GG PPPPPPP
Sbjct: 303 GGLPPPPPPP 312
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.5 bits (58), Expect = 3.2
Identities = 20/70 (28%), Positives = 25/70 (35%)
Frame = +1
Query: 244 PPESXXWXPAX*TAPTKKXXPXKNXAPPPXXGXGPPPKRXAWW*NPPTXQXLXXXXPPXT 423
PP S P+ P + APP PP + A +PP+ L PP
Sbjct: 139 PPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMP 198
Query: 424 PPAKKXXXPP 453
P K PP
Sbjct: 199 P---KVPPPP 205
Score = 25.8 bits (54), Expect = 9.7
Identities = 13/43 (30%), Positives = 13/43 (30%)
Frame = +2
Query: 626 PPXPXXPPPPXGGGXXPXXXPXXGGXXPPPPPPXXXGXXKTPP 754
PP PP P P P PP P K PP
Sbjct: 124 PPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPP 166
>SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 419
Score = 25.8 bits (54), Expect = 9.7
Identities = 12/31 (38%), Positives = 12/31 (38%)
Frame = -1
Query: 724 GGGGGGGXPPXXXXXXGXXXPPXGGGGXXGG 632
GG GG G PP GG G GG
Sbjct: 41 GGDGGQGCSSFIKEKFRPYGPPDGGNGGDGG 71
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.8 bits (54), Expect = 9.7
Identities = 21/91 (23%), Positives = 22/91 (24%)
Frame = +3
Query: 627 PXPPXXPPPPXGGXXXPXXLXXXGGXPPPPPPPXXXXKXKXPHXNXXGXKKXTXXXXXRG 806
P P PP P P G PP P P P K
Sbjct: 1153 PAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPP 1212
Query: 807 GGXXXXLXPXPXXXPPPPPXXKKKKXXXPRP 899
+ P P PP P K P P
Sbjct: 1213 PSTAPPV-PTPSAGLPPVPVPTAKAPPVPAP 1242
Score = 25.8 bits (54), Expect = 9.7
Identities = 16/57 (28%), Positives = 17/57 (29%), Gaps = 3/57 (5%)
Frame = +2
Query: 593 PXXXXXLPXXXPPXPXXPPPPXGGGXXPXXXPXXGGXXPPPP---PPXXXGXXKTPP 754
P +P P PP P P P G PPP PP PP
Sbjct: 1172 PAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPP 1228
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,221,726
Number of Sequences: 5004
Number of extensions: 34010
Number of successful extensions: 348
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 527257104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -