Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_D13
         (870 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc...    64   2e-11
SPAC977.15 |||dienelactone hydrolase family|Schizosaccharomyces ...    28   1.5  
SPAC1952.17c ||SPAC890.01c|GTPase activating protein|Schizosacch...    27   4.6  
SPAC3F10.09 |||1-|Schizosaccharomyces pombe|chr 1|||Manual             26   6.1  

>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 682

 Score = 64.5 bits (150), Expect = 2e-11
 Identities = 53/199 (26%), Positives = 91/199 (45%), Gaps = 4/199 (2%)
 Frame = +2

Query: 170 SNILQDSRFTKYLSDPRYRQIPKHERKVKIDKRFQPMFDDEKFKVKYTVDKRGRPIN-ET 346
           SN++ D RF    SDPR+ ++ +   KVK+D+RF+ + +D+ FK   +VD+ GRP+N + 
Sbjct: 17  SNVVADPRFQSVHSDPRFSRLKRGNFKVKVDERFKSLKEDKDFKTTASVDRYGRPLNQDK 76

Query: 347 STENLRKYYXXXXXXXXXXXXXXXXXXPGRFVKRPSTDDESIDKIDPK-TLNDKLTRGKL 523
           +T+ + + Y                           TD+E +     K T +++LT    
Sbjct: 77  ATKEIDRLYELENEGSSSSSE-----------SSEITDNEEVASASSKSTKSEELT---- 121

Query: 524 DKKIKTRLLDLDIDYARGEGVLLT-XXXXXXXXXXXXXXXXXXXXWGELDADAETTEES- 697
           D++ +   +    D ARGEG++ T                        ++ +      S 
Sbjct: 122 DEESEDEEV---YDPARGEGIISTSESSDESDAESETEAQPEISELAGIEPEENIPRGSE 178

Query: 698 TRRIAICNMDWDXIKASDL 754
           T R+A+ NMDWD ++A DL
Sbjct: 179 TNRLAVVNMDWDNLQAVDL 197


>SPAC977.15 |||dienelactone hydrolase family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 247

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +2

Query: 467 SIDKIDPKTLNDKLTRGKLDKKIKTRL 547
           SI+ IDPKT+  K  R K  +KI + L
Sbjct: 83  SIEMIDPKTIEQKEARSKFMEKISSPL 109


>SPAC1952.17c ||SPAC890.01c|GTPase activating
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 619

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +3

Query: 618 VAIQKMIVKWSMNGESWMLMLKLLKSQHGESPFAIWTGIXLKHR 749
           + IQ +  ++S+  ++WMLML+ L +         W  +  KHR
Sbjct: 28  LCIQGIPDEYSLRAKAWMLMLEFLPTDRSN-----WQSVLEKHR 66


>SPAC3F10.09 |||1-|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 264

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +2

Query: 431 GRFVKRPSTDDESIDKIDPKTLNDKLTRGKLDKKIKTRL 547
           G +VK P+T       I+   L DKL++GK+D  I + L
Sbjct: 200 GEWVKIPTTYAGGGRSIEDLDLVDKLSKGKVDLTIGSAL 238


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,844,226
Number of Sequences: 5004
Number of extensions: 50729
Number of successful extensions: 141
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)